Thioalkalivibrio sp. K90mix: TK90_0326
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Entry
TK90_0326 CDS
T01174
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tkm
Thioalkalivibrio sp. K90mix
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tkm03016
]
TK90_0326
Enzymes [BR:
tkm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
TK90_0326
Transfer RNA biogenesis [BR:
tkm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TK90_0326
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
ADC70841
UniProt:
D3SDM1
LinkDB
All DBs
Position
complement(346258..347436)
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AA seq
392 aa
AA seq
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MHDHGLIETPEALQAFLDSIAGTDWIALDTEFLREKTYYPQLCLVQAATLDQLACIDPLR
LDIQQLAPLFRDPGITKVFHAASQDMELLYRELGFVPSPVFDTQIAASMLGYGEQVGYAN
LVKTVLERDLDKSQTRTDWSRRPLSAEQIRYAADDVRHLATLFNRLLHELDTHDRMHWLR
PEMEALSNPALYEPDPEQSWQRVSGVKRLKPKERGVLKCVAAWRERTAQSSNRPRRWVLS
DDLLLDIARRTPADAQGLRELRQFPGGMKPEHTESLLAAIREGQALPREQWPQLPEKPRL
DERDEVLVDIGMALLRECAREHQISAAAIAQRKDVIELLKSDGKSGRLSSGWRREIAGQT
IQHWFSGESRLACKPSGELDMEPVSETIAASP
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgcatgaccacgggctgatcgagacgcccgaggccctgcaggcgttcctcgattccatc
gccgggacggactggatcgcgctggacaccgagttcctgcgcgagaagacctactacccg
cagctctgtctggtgcaggccgccacgctggatcagctcgcctgcatcgacccgctgcgt
ctcgacatccagcagctcgccccgctgttccgggacccgggcattaccaaggtcttccac
gccgcctcgcaggacatggagttgctgtatcgcgaactggggtttgtgcccagccctgtg
ttcgacacccagatcgcggccagcatgctcggctacggcgagcaggtcggctatgccaac
ctggtcaagaccgtactcgagcgcgatctagacaaaagccagacgcgtaccgactggtcc
cgtcggccgctaagcgctgaacagatccgttatgccgcggacgatgtccgtcacctcgcg
acactgttcaaccgcctgctgcacgagctggacacccacgatcgcatgcactggctgcgc
ccggagatggaggccctcagcaatccggccctgtacgaaccggacccggaacaaagctgg
cagcgcgtatcgggcgtcaagcgactgaaacccaaagagcgcggcgtactcaaatgcgtc
gcggcctggcgcgagcgcaccgcgcaaagcagcaatcgcccgcggcgctgggtcctgtcc
gacgacctcctgctggatatcgcccgccgcacaccggctgatgcccagggcttgcgcgaa
ctgcgccagttccccggcgggatgaagccggaacacaccgaatcgcttctggccgccatc
cgggaaggccaggccctgccgcgtgaacaatggccacagctgccggagaagccgcgcctg
gatgagcgcgacgaggtgctggtcgatatcggcatggcgctgctgcgcgaatgtgcacgc
gagcaccagatcagcgccgcggcgatcgcacaacgcaaggatgtgatcgaactactgaag
agcgacggcaagagtggccgcctgtcgagtggctggcgccgggagattgcgggtcagacc
atccagcactggtttagcggcgagagccgcctggcgtgcaagcccagtggcgagcttgat
atggaacccgttagcgaaacgatcgcggcgtctccctag
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