Thioalkalivibrio sp. K90mix: TK90_1028
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Entry
TK90_1028 CDS
T01174
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK90_1028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tkm03019
]
TK90_1028
Enzymes [BR:
tkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TK90_1028
Messenger RNA biogenesis [BR:
tkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TK90_1028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
RecX_HTH2
UvrD-helicase
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADC71543
LinkDB
All DBs
Position
1090764..1092089
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AA seq
441 aa
AA seq
DB search
MSSVSSFADLGLAESLLRALDQAGYKTPTPIQAQAIPEVLKGGDLLAAAQTGTGKTAGFT
LPILQRLTTGQTPERKPGRPRALILTPTRELAAQVHDSVRTYGRHLSLKSMTIFGGVNMN
PQIKALRGPMDIVVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGL
MPKQRQNLMFSATFSGEIRTLASSLLNKPAEVDVAPRNTAAETVQQTVHLVESSRKRELL
SHLIRSNDWGQVLVFTRTKHGANRLAQKLTQDGVPSEAIHGNKSQAARTKALKQFKTGAV
PVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSVGAALSLVDGEEMKL
LKGIERLIQRPIERIETDGFATPKPAANDGNGQRRGGKPGGGARNGKPRQSRGGKPGGKP
GGNRGGGQGRAAQGNRAARSR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgtttcttcttttgccgaccttgggttggccgaatcccttttgcgtgcgctg
gaccaggccggttacaagacgccgaccccgatccaggcccaggcgatcccggaagttctt
aaaggcggggatctgctggccgccgcgcagaccgggaccggcaagaccgccggctttacc
ctgccgatcctgcagcgactgaccaccgggcaaacgcccgagcgcaagccggggcgtccg
cgggcactgatcctgacgccgacgcgcgagctggctgctcaggtccacgattccgtccgt
acctatggccgccacctgtcgctgaagtcgatgaccatctttggtggcgtgaacatgaat
ccgcagatcaaggcactgcggggccccatggatatcgtcgtggcgaccccgggtcgcctg
ctggaccatgctggccagaagacgatcgacctctccggcgtggagatcctggtgctggat
gaggccgatcgcatgctggacatgggcttcatccgcgacattcgtcgtctgattggcctg
atgcccaagcagcgtcagaacctgatgttctcggcgaccttctccggcgagatccgcaca
ctggcgtcgagcctgctgaacaagccggccgaggtcgacgtggccccgcgcaacaccgcc
gccgagaccgtgcagcagaccgtgcatctggtggagagcagccgaaagcgcgagctgctg
agccacctgatccgcagcaacgactggggccaggtgctggtgtttacccgtaccaaacac
ggcgccaatcgcctggcacagaagctgacgcaggatggcgtgccctccgaggcgatccat
ggcaacaagagccaggcggcccgtaccaaggcgctcaagcagttcaagaccggggccgtt
ccggtcctggtcgcgacggacatcgcggcgcgcggcctggacatcgaccagttgccgcag
gtggtcaacttcgagctgccaaatgtgccggaagactacgtacaccgcatcggccgcacc
ggtcgtgccggttccgttggtgccgccctgtcgctggtggatggtgaagagatgaagctc
ctgaagggcatcgaacgcctgattcagcgcccgatcgagcgcatcgaaaccgatggcttc
gcgaccccgaagccggcggccaacgatggcaatggccaacgccgtggcggcaagccgggc
ggtggtgcgcgtaatggcaagccgcgccagagccgtggcggcaagcccggcggcaagccc
ggcggcaatcgcggtggcggtcagggccgcgcggcccagggcaaccgggctgcacgcagc
cgctag
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integrated database retrieval system
