Thioalkalivibrio sp. K90mix: TK90_1046
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Entry
TK90_1046 CDS
T01174
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK90_1046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tkm03019
]
TK90_1046
03009 Ribosome biogenesis [BR:
tkm03009
]
TK90_1046
Enzymes [BR:
tkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TK90_1046
Messenger RNA biogenesis [BR:
tkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TK90_1046
Ribosome biogenesis [BR:
tkm03009
]
Prokaryotic type
rRNA helicases
TK90_1046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Flavi_DEAD
ResIII
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ADC71558
UniProt:
D3S953
LinkDB
All DBs
Position
complement(1105229..1107112)
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AA seq
627 aa
AA seq
DB search
MSESPSFAELGLSESLARALLQLGFTTPTPVQAACIPALLAGDDVLGEAQTGTGKTGAFG
LPLIDSIDPAQRRVQALILAPTRELAGQVATALEGFAASIDGLEILPVYGGQPMGVQIRA
LRDGAQVVVGTPGRVVDHIKRGTLTLDALRMVVLDEADEMLRMGFVEEIEWILEQTPAER
QTTLFSATMPAPIRRIAHRHMREPQEIRIGAGNEAGTDIDQSYCLVDQRHKTEALGRMIE
VEAGLDAAIVFARTKAATAEIAEALNAQGVQSSPLNGDMEQGERERVVADLRDGRLDVIV
ATDVAARGIDVPRITHVFNYDAPGDAEVYVHRIGRTGRAGRKGRAILFLEPRKRRMLRDI
ERLTGKPVREQKVPDRAAVIARREERLAERLQAELAGEASPQLDALLDRLLANGQMGERD
LARALLALATQGTPLDGTPNAHDPVTAAASRPERDSHRADRNRDRAPRPSRGKDRGPEAD
MVRYYMPVGRNHGIAPGAIVGALANEGGLNGRDIGRIGLQDDHSHVDLPAALDEAAVRRL
GNIHVANRRLEMARSVPTRDSRATERHAPAARKPRGPGKPAAKRRGPAPANGKRPAYAAA
GKPRKAPSRKAADSRGDGTLSVKRRSA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatccccctccttcgccgaactcggcctgtccgagtcgttggcccgtgccctg
ttgcaactgggcttcaccaccccgaccccggtccaggccgcgtgcatcccggccctgctg
gccggcgacgacgtgctgggcgaggcccagaccggcaccggcaagaccggcgccttcggc
ctgccgctgatcgactcgatcgatcccgcgcagcgtcgcgtgcaggcgctgatcctcgcg
ccgacccgcgagctggccggccaggtcgccactgccctggagggcttcgcggccagcatc
gacgggctcgagatcctgccggtctacggcggccagccgatgggcgtgcagatccgcgcc
ctgcgcgatggtgcgcaggtcgtggtcgggacgcccggccgcgtggttgaccacatcaag
cgcggcacgctgacactggatgcgctgcgcatggtggtgctggacgaggccgacgagatg
ctgcgcatgggctttgtggaggagatcgaatggatcctcgaacagaccccggccgagcgc
cagaccacgctgttctccgcgaccatgccggcaccgatccgccgtatcgcgcaccgccac
atgcgcgagccgcaggaaatccgcattggcgcgggcaacgaggccggcaccgacatcgac
cagagctactgcctggtcgaccagcgccacaagaccgaggccctgggccggatgatcgag
gtggaagcgggactggacgcagcgatcgtgtttgcccgtaccaaggccgcgaccgcggag
atcgccgaggccctgaatgcccagggcgtgcagtcctccccgcttaatggcgacatggaa
cagggcgagcgcgagcgcgtagtcgccgacctgcgcgatggccgtctggacgtgatcgtg
gccaccgacgtggccgcccgcggcatcgatgtcccgcgcatcacccatgtcttcaactac
gacgccccgggcgatgccgaggtgtacgtgcaccgcatcggccgcaccggccgcgccgga
cgcaagggccgtgcgatcctgttcctggagccgcgcaagcggcgcatgctgcgcgatatc
gaacgcctgaccggcaagcccgtgcgcgagcagaaggtcccggatcgcgccgccgtgatc
gcccgccgcgaggagcgcctggccgaacgcctgcaggccgagctggccggcgaagcatcg
ccacagctcgacgccctgctggaccgactgctggccaacggccagatgggcgaacgcgat
ctcgcccgcgccctgctcgccctggcaacccagggcacgccgctggatggcacgcccaac
gcgcacgacccggtgacggcggccgccagccgacccgagcgcgacagtcatcgtgcggat
cgcaaccgtgaccgcgccccccgccccagccgcggcaaggaccgtgggccggaagcggac
atggtgcgctactacatgccggtcggtcgcaatcacggcatcgcgcccggcgcgattgtc
ggcgcgctggccaacgagggtggcctgaacggccgcgacatcggccggatcggcctgcag
gacgaccacagccatgtggacctgccggccgcgctggacgaggccgcagtgcgccgactg
ggcaatatccatgtcgccaaccgtcgcctggagatggcgcgctccgtgccgacccgggac
tcgcgtgcgaccgagcgccacgccccggccgcgcgcaagccccgtggtcccggcaagccg
gccgccaagcggcgcggcccggccccggccaacggcaagcgcccggcctatgcggctgcc
ggaaagccgcgcaaggcgccgagccgcaaggccgccgacagccgcggtgacggcaccctg
tcggtcaagcgccgctccgcctga
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