Thioalkalivibrio sp. K90mix: TK90_1175
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Entry
TK90_1175 CDS
T01174
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K02405
RNA polymerase sigma factor FliA
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm02020
Two-component system
tkm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TK90_1175
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TK90_1175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tkm03021
]
TK90_1175
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
tkm02035
]
TK90_1175
Transcription machinery [BR:
tkm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TK90_1175
Bacterial motility proteins [BR:
tkm02035
]
Flagellar system
Flagellar assembly proteins
Stator
TK90_1175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ADC71684
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Position
1250616..1251377
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AA seq
253 aa
AA seq
DB search
MMSPRNRLPGYESVAATGHEQRVAEHIELVHRIAHHLMARLPSSVQVDDLIQAGMIGLLE
AARQFEGGQGATFATYAGIRIRGAMIDELRRSDWTPRSVHRNSRKIAEAIQTVEAREGRA
ARGVEVAEELEVPIDEYYSMLQDHAGAHLFALDDLGGTDGDADRVIEGQEASPSRTIEAG
EFREELAAALGDLPERERLVLSLYYIEELNLREIGAVLGVTESRVSQIRSQAVIRLRARL
GSWLEDGEALQLF
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgccgcgtaatcgcctccccggatacgagagcgtggccgcgacaggccacgag
cagcgcgttgcggagcatatcgagctggtgcatcgcatcgcgcatcatctgatggcgcgt
ctgccttcctcggtccaggtcgatgacctgatccaggccggcatgatcggcctgctggag
gccgcgcggcaattcgaaggcgggcagggtgccacgtttgcgacctatgccgggattcgg
atccgtggcgcgatgatcgacgaattacgccgcagtgactggacgccgagatcggtacac
cgcaacagccgcaagatcgccgaggcgatccagacggtcgaagccagagaggggcgcgcg
gcgcgcggggtcgaagtggccgaggaactcgaggtgccgatcgacgagtactactcgatg
ctgcaggaccatgccggcgcccatctgttcgcgctggacgacctgggcggcaccgatggt
gatgcggaccgggtgatcgaggggcaggaggcctcgccctcgcgcacaatcgaggctgga
gaatttcgcgaggagctggccgccgcgctgggcgatttgcccgaacgcgaacgtctggtg
ctgtcgctttattacatcgaggagctcaacctgcgcgagattggcgcggtgctgggggtg
accgagtcgcgcgtcagccagatccgcagtcaggccgtcatccgactgcgcgcgcgcctg
ggttcctggctcgaagacggcgaggctttgcagttattctga
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