Thioalkalivibrio sp. K90mix: TK90_1213
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Entry
TK90_1213 CDS
T01174
Name
(GenBank) integration host factor, beta subunit
KO
K05788
integration host factor subunit beta
Organism
tkm
Thioalkalivibrio sp. K90mix
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tkm03032
]
TK90_1213
03036 Chromosome and associated proteins [BR:
tkm03036
]
TK90_1213
03400 DNA repair and recombination proteins [BR:
tkm03400
]
TK90_1213
DNA replication proteins [BR:
tkm03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TK90_1213
Chromosome and associated proteins [BR:
tkm03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
TK90_1213
DNA repair and recombination proteins [BR:
tkm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
TK90_1213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_euk_1
TetR_C_30
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
ADC71722
LinkDB
All DBs
Position
1293860..1294156
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AA seq
98 aa
AA seq
DB search
MTKSELIESLAQKSPHLPARDVEMCVKALLERMSQALAHGQRVEIRGFGSFSLHFRPPRL
GRNPKTGEGVALPGKHVPHFKPGKELRERVNSPAVVDE
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatcggaattgatcgaaagcctcgcccagaaatcgcctcacctgcccgcacgg
gatgtcgagatgtgcgtgaaggcgttgctggaacggatgagtcaggccctggcgcatggt
cagcgagtcgagattcgtggcttcggcagcttctccctgcatttccgcccgccgcgtctt
ggacgcaatcccaagaccggggaaggggtggcactgccgggcaagcatgtcccgcatttc
aaacccggcaaggaactgcgcgagcgggtcaatagccccgcggttgtcgacgagtaa
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