Thioalkalivibrio sp. K90mix: TK90_1624
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Entry
TK90_1624 CDS
T01174
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TK90_1624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tkm03400
]
TK90_1624
Enzymes [BR:
tkm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
TK90_1624
DNA repair and recombination proteins [BR:
tkm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TK90_1624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADC72121
UniProt:
D3SAR6
LinkDB
All DBs
Position
complement(1737139..1740861)
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AA seq
1240 aa
AA seq
DB search
MSAGAQPLALMELPLHGSRLIEASAGTGKTYTIAALYLRLVLGHGELPEGTGELTPPQIL
VMTFTEAATRELRERIRAVLARGARILRGEPAPAHEALWPALLDAYPEPAARAGAARRLE
LAAEWMDEAAVSTIHGWCYRMLREHAFDSGSLFNQRLEADQGELVAEAARDYWRRFVYPQ
PADHLRLLRQAFGEGPDDLLAKVRPLLGHLSDTVGLEPYRTPDGLYAELATRLARLAELK
AVWREDAAEVERQFRALHASALNRQQYQKPDDLIAAMHAWAEDPAALLPEKVGGTPVLER
MCEQGVGERLKKGQSLPDDLHPAFVALNAAPEVCADDSERLLQAASVEIDRQFRQAQRVR
VQMGFNDLLLRLRDALDGPGGEALAETLRRQFPVALVDEFQDTDPVQYRILERVYRIEDN
PAEQGLLLIGDPKQAIYGFRGADIHSYLKARRATAGRHYTLPRNFRSTARLVGAVNRLFA
HADGWPEGAFLFGQGDAGELPFHRVDAQDRGERLEHDGAEVPALTLWCTDPGTSVGTGVY
REQMAAAAAEQMVRLLNGGADGTCGFRDGEGWRPVRPRDIAVLVRGRVEARLMQEALRAR
GVRSVYLSEGESVFATPEAGDLLRWLRACAEPTSERLLRAALATPTLGQSLADLHRLTTD
ELRWEHRVEQFREYRRLWQTRGVLPMLRRLLHDFDVPRRLLASADGERALTNLLHLSELL
QRAAAELDGEQALIRHLIEHREGERAAADEQVLRLESDEDLVKVVTLHKSKGLEYPLVFL
PFVCAFRAVDPKKDVPRIDRPPGGRPRWIFRMDSRAQERADRERLAEDLRLLYVGMTRAR
HACWMGLAPIVSGRGKENELHRSAVGYLLNGPEPMPNGELEDRLQEARGDESAIAIEPLP
EIMGTSVRLAQQTAALGRARTPTRPVREPWWVASYSAIAHPDEAHAPAPLVADPVAPDSA
LEDLLRERAETPGAGADPSHGVSRPEVPVAGGLHDFPRGPAPGTFLHGLLEWAAEQGWEA
VVTDRARLDDEVRRRCEQRDWGDWAPVVQDWMRRLITAEYALASGGSFRLDELGVYQPEL
EFLFETRWLQSRRLDAAVCEQLLPGQARPPAGDRLLNGMLKGFVDLVFEHEGRYYVADYK
SNWLGPGPDAYGPERLRDAVLEHRYDLQLVIYTLALHRQLQARMPGYDYDRHMGGGVYLF
LRGIDAPGRGVFHDCPPRALIEQLDGWFAEGPDRPREARA
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcgggcgcgcagccgctggcgctgatggaactgccgctgcacggcagccgcctg
atcgaggccagtgccggcaccggcaagacctacaccatcgccgcgctgtatctgcggctg
gtgctgggccacggcgagctgccggagggtaccggcgagctgaccccgccgcagatcctg
gtgatgacctttaccgaggccgccacccgcgagctgcgcgaacgcatccgcgccgtgctg
gcgcgcggggcgcgcatcctgcgcggcgaaccggccccggcccacgaggcgttgtggccg
gcgctgctggacgcctacccggagccggccgcccgcgccggggccgcgcgacggctggag
ctggccgccgagtggatggacgaggcggcggtctcgaccatccacgggtggtgctatcgc
atgctgcgcgagcatgccttcgacagcggcagcctgttcaaccagcgcctggaggcggac
cagggggagctggtggccgaggcggcgcgtgactactggcgccgctttgtctatccgcag
ccggcggatcacctgcgtctgctgcgccaggcctttggcgaggggcccgacgatctcctg
gccaaggtgcggcccctgctcgggcatctgtcggacacggtggggctggagccgtaccgg
acgccggacggattgtacgccgagctggccacgcgcctggcgcgcctggccgagctgaag
gcggtctggcgcgaggatgccgccgaggtggaacgccagttccgcgccctgcatgccagc
gcgctgaatcgccagcaataccagaagccggatgacctgatcgcggcgatgcacgcctgg
gccgaggacccggccgcgctgctgccggagaaggttggcggtaccccggtgctggagcgc
atgtgcgagcagggcgtgggcgagcggctgaagaaggggcaatcgctgccggatgacctg
cacccggccttcgtcgcgctgaatgccgcgcccgaggtctgcgcggacgacagcgaacgc
ctgctgcaggcggcgtccgtggagatcgatcgccagttccgccaggcccagcgcgtgcgg
gtgcagatgggtttcaacgacctgctgctgcgtctgcgcgatgccctggacggccctggt
ggcgaggcgctggccgagacgctgcggcgtcagttcccggtcgccctggtggacgagttc
caggacaccgacccggtgcagtaccgcatcctggaacgcgtctatcgcatcgaggacaac
ccggccgagcagggcctgctcctgatcggcgatccgaagcaggcgatctacggctttcgc
ggcgcggacatccacagctatctgaaggcacggcgtgcgaccgccggacggcactacacc
ctgccgcgcaacttccgctcgaccgcgcgcctggttggcgcggtgaaccgcctgttcgcc
cacgccgacggctggccggagggggccttcctgttcggccagggcgatgccggcgagctg
ccgtttcaccgggtggacgcccaggatcgcggtgagcgtctggaacacgacggagccgag
gtgccggcgctgaccctgtggtgcacggacccgggcacgtcggtcggcacgggcgtctat
cgcgaacagatggccgctgcggcggccgagcagatggtgcgcctgctcaatggcggggcg
gacgggacctgcgggtttcgcgatggtgaggggtggcggccggttcgcccgcgggatatc
gccgtgctggtgcgcggccgggtggaggcgcggttgatgcaggaggcgctgcgcgcgcgg
ggggtgcgcagcgtgtacctgtcggagggggagtcggtctttgccaccccggaggccggg
gacctgctgcgctggctgcgggcctgtgccgagccgaccagcgagcgcctgctgcgcgcg
gcgctggcgaccccgacgctggggcagtcgctggccgatctgcaccggctgaccaccgac
gagctgcgctgggagcaccgcgtcgagcagttccgcgagtaccgccgcctgtggcagacg
cgcggtgtgctgccgatgctgcgccgtctgttgcacgacttcgatgtcccgcgccggctg
ttggccagtgccgatggcgagcgcgcgctgaccaacctgctgcacctgagcgaactgctg
cagcgcgcggccgccgagctggatggcgaacaggccctgatccggcacctgatcgagcac
cgcgagggcgagcgggcggcggcggacgagcaggtactgcgcctggagagcgacgaggac
ctggtcaaggtggtcacgctgcacaagtccaaggggctggagtacccgctggtgttcctg
ccgtttgtctgcgcgtttcgcgcggtcgacccgaagaaggacgtgccgcggatcgaccgc
ccgccgggtggcaggccgcgctggatctttcgtatggacagccgtgcccaggagcgcgcc
gatcgcgagcgcctggcggaggacctgcgcctgctgtatgtgggcatgacccgcgcgcgc
cacgcctgctggatggggctggcgccgattgtgtcggggcggggtaaagagaacgagctg
caccgcagcgcggtcggctacctgctgaacggcccggagccgatgccgaacggcgagctg
gaggaccggctgcaggaggcccgtggtgacgagtccgcgattgcgatcgaacccctgccc
gagatcatgggcacgagcgtgcggctggcgcagcagacggcggccctcgggcgggcccgc
accccgacacgcccggtacgcgagccctggtgggtggccagctacagcgccatcgcacac
ccggacgaggcccatgcgccggccccgctggttgccgacccggtggccccggattccgcg
ctggaggacttgctgcgcgaacgtgcggagactcccggtgccggggcggatccgtcccac
ggggtgtcgcggcccgaggtgccggtggccggcgggttgcacgactttccgcgcgggccc
gcgccggggaccttcctgcacggcctgctggaatgggcggcggagcagggctgggaggcc
gtggtcactgaccgcgcccggctggacgacgaggtgcgaaggcgctgcgagcaacgcgac
tggggtgactgggcgcccgtcgtgcaggactggatgcgccggctgatcacggccgagtac
gcgctggcctccggcggctcgttccgtctggacgagctgggcgtgtatcagccggagctc
gagttcctgttcgagacgcgctggctgcaaagccggcggctggatgccgccgtgtgcgag
cagctactgcccggacaggcgcggccaccggcgggcgaccggctgttgaacggcatgctc
aagggttttgtcgatctcgtcttcgagcacgagggccgctattacgtcgcggactacaag
tccaactggctggggcccggccccgacgcctacgggcccgagcgcctgcgcgacgcggtg
ctggaacaccgctatgacctgcagctggtgatctacaccctggccctgcatcgccagctg
caggcgcggatgccggggtacgactacgaccgtcacatggggggcggggtgtacctgttc
ctgcgcggaatcgatgcgcccggaaggggcgtgttccatgactgcccgccacgggcactg
atcgagcagctggacggctggttcgccgaggggccggaccggccgcgggaggcgcgggca
tga
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