Thioalkalivibrio sp. K90mix: TK90_2061
Help
Entry
TK90_2061 CDS
T01174
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
tkm
Thioalkalivibrio sp. K90mix
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tkm03019
]
TK90_2061
Enzymes [BR:
tkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TK90_2061
Messenger RNA biogenesis [BR:
tkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TK90_2061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADC72552
UniProt:
D3SC52
LinkDB
All DBs
Position
complement(2178009..2180522)
Genome browser
AA seq
837 aa
AA seq
DB search
MSKDPSEAPQARALEDLLNPLDAALESRGAAVLVAEPGAGKTTRVPLHLAACNREDRVIV
LQPRRLAARMAATYMAGQLGESAGQTVGYRVRDEQKVSERTRVELVTDGLFLRRIQGDPL
LEGVGTVVFDEFHLRRPEAELALAFALQVRRLLRPELRIVVMSATLDDEAVARLLAGPEA
DAVAVLRARGRQFPVEVRYAPTAKDAPLADGVAQAVRDALAVEPGSILVFLPGEREIREV
AARLGEGVDTPAGPARIAPLFGRLSAQEQARAVRPAPAGERKVVLATDIAETSLTIEGVR
VVIDTGLSREPRFDAATGLSRLVTRPASKAAAEQRAGRAGRTESGVAIRLWSRADEVARP
DYATPGMQQVDLLPLALELAGWGEAVAELDWLEPPPAQGLASAQAVLAELGAVDADGRVT
GHGQALLRLPAHPRLAHMLLRGRERGLARLACELAVAVEEPGVAGPEPPLELGARLERAR
RSGGRAWPSGLRRLEQALARVGGRPVGTEAVLDESSALGVLAALAWPERIARRRGEAAGR
FVMGNGRGAWLPERERLAHTDYLVAVDCTDADREARIRCAVALDLAALEQEAPELFHRET
RCDWVEDGARLENARVRRIGTLVVERQMVALDDPAATIPRWCERLRREGLALLPWDDTAT
QLRARIQLLHEAMPEGGFPDLRDTALLRALEDWLGPYLAGITRRRDLERLDLAAILRARL
DWDHQQQLEREAPARIEVPSGSAHRIDYTQDPPVLAVKLQELFGLGETPRVAGGRMALVL
HLLSPARRPVQVTQDLKSFWENGYPDVRRELKGRYPKHPWPEDPWNAPATRHTKRRG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagatccgagcgaggcgccgcaggcccgggcgctggaagatctcctgaatccc
ctggatgctgcgctggaatcgcgcggtgccgctgtgctggtggccgagcccggtgccggc
aagaccacccgcgtcccgctgcatctggccgcctgcaaccgcgaggaccgcgtgatcgtg
ctgcagccgcgccggctggccgcgcgcatggcggcgacctatatggcggggcagctgggc
gaatcggccgggcagacggtcggctaccgcgtgcgcgacgagcagaaggtctccgagcgc
acccgggtggagctggtgaccgatggcctgttcctgcggcgcatccagggcgacccgctg
ctggaaggggttggtacggtggtcttcgacgaattccatctgcgccggccggaggccgag
ctggcgctggcctttgccctgcaggtgcgtcggctgctgcgcccggagctgcgcatcgtg
gtgatgtcggcgaccctcgacgacgaggccgtggcccggctgctggccggcccggaggca
gatgccgttgcggtgctgcgcgcccgtgggcggcagttcccggtcgaggtccgttatgcc
ccaacggcgaaggatgcgccgctggccgacggtgtggcacaggcggttcgggacgcgctg
gcggtggagccgggctcgatcctggtcttcctgcccggcgagcgcgagatccgcgaagtg
gccgcgcgcctgggcgagggggtggacacgcctgccggccccgcgcgtatcgcaccgctg
ttcggccggctatcggcccaggagcaggcccgggccgtgcgcccggcgccggcgggcgag
cgcaaggtggtgctggcgaccgatatcgccgagaccagcctgaccatcgagggcgtgcgc
gtggtgatcgacacggggctttcccgcgagccgcgcttcgatgccgcgaccgggctctcg
cgactggtgacgcggccggcctcgaaggctgccgccgagcagcgggccgggcgcgccggg
cgcactgagtcaggggtggcgatccgcctgtggtcgcgggccgacgaggtcgcgcgcccg
gactatgccaccccggggatgcagcaggtggacctgctgccgctggccctggaactggcc
ggttggggcgaggcggtggccgagctggactggctggagccgccgcccgcgcagggcctg
gcctccgcacaggcggtccttgcggagctgggcgcggtggatgccgacgggcgggtgacc
gggcacgggcaggccctgctgcgcctgccggcccacccgcgtctggcgcatatgctgttg
cggggccgggagcgggggctggcgcgcctggcctgcgaactggcggtagccgtggaagaa
cccggcgtggccgggccggagccaccgctggagctgggcgcgcgcctggagcgcgcgcgc
cgctcgggtggccgggcctggccatccggtctgcggcgtctggagcaggcgctggcacgc
gtcgggggccgccccgttggcacggaagcagtgctggacgaaagttcggcgctgggcgtg
ctggcggcgctggcctggccggagcgcatcgcgcggcgtcgcggcgaggcggccgggcgc
tttgtgatggggaacggtcgcggcgcgtggctgccggaacgcgagcgtctggcgcatacc
gactacctggtcgcggtggactgcacggatgccgaccgcgaggcgcgcatccgctgtgcg
gtggcgctggatctggccgcactggagcaggaggccccggaactcttccatcgcgagacg
cgctgcgactgggtggaggatggcgcacggctggagaacgcgcgggtccggcggatcggc
acgctggtggtggagcggcagatggtcgcgctggacgaccccgccgccaccatcccgcgc
tggtgcgaacggctgcgccgcgagggccttgcgctgctgccctgggatgacaccgcgacc
cagctgcgcgcgcgcatccagctgttgcacgaggcgatgcccgagggcggctttccggat
ctgcgcgacaccgcgctgctgagggcccttgaggactggttggggccgtatctggccggg
atcacacggcgtcgggatctggagcggctggacctcgcagcgatcctgcgcgcgcggctg
gactgggatcaccagcagcaactggagcgggaggcgccggcgcggatcgaggtcccctct
ggttccgcccatcgcattgattacacgcaggaccccccggtgctggcggtgaagctgcag
gagctgttcggcctgggcgagacaccccgggtagcgggcggccgcatggcgctggtgctg
cacctgctgtcgccggcgcggcgcccggtgcaggtcacccaggatctgaagagcttctgg
gagaacggctatcccgacgtgcgccgcgagctcaaggggcgctatccaaaacacccctgg
ccggaggatccatggaatgcgccggccacgcggcatacgaagcggcgcgggtag
DBGET
integrated database retrieval system
