Thermococcus kodakarensis: TK0170
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Entry
TK0170 CDS
T00226
Name
(GenBank) endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
tko
Thermococcus kodakarensis
Pathway
tko03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TK0170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tko03400
]
TK0170
Enzymes [BR:
tko01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
TK0170
DNA repair and recombination proteins [BR:
tko03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
TK0170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Amidohydro_1
DUF2345
Citrate_bind
Motif
Other DBs
NCBI-ProteinID:
BAD84359
UniProt:
Q5JFL1
LinkDB
All DBs
Position
complement(141856..142701)
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AA seq
281 aa
AA seq
DB search
MFKVDRLRFGTAGIPLSTPKPSTITGIEHVRNLGLDAMELEFVRGVNISPELAKKIKYVA
KKNDVLLTAHAPYYINLNAKEKAKVEASKKRIIQSAERLYEAGGWSVVFHAGYYLKQPPE
SVYQRILEALKDIQKELMDKGVKVWIRPELTGKPTQFGDLKEIVKLSEELEMVLPTIDFA
HAHARNRGKCNSVEEWREMLSFIEDRLGREALDNMHIHMSGIEYTDKGEKRHLPLQESDM
NWEDLLRVLKEFRVKGVVISESPNIEEDALLMKKKYEEIKA
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaggtggacaggcttcgctttggaacggctgggatacccctgtcaacgccgaag
ccttcaacgattactggcatcgagcacgtcagaaatctcggattagatgctatggagctt
gagttcgtgaggggtgtcaacatttccccagagctggcaaagaaaatcaagtacgtggca
aaaaagaacgacgttcttctaaccgctcacgccccatactacatcaacctcaacgctaag
gaaaaggcgaaggtcgaggcgagcaagaagaggataatccagagcgccgagaggctctac
gaggcgggtggctggagcgtcgtattccatgctggctactacctcaaacagccgccagag
agcgtctatcagagaatcctcgaagcactcaaggacatccagaaggagctgatggacaaa
ggcgtgaaagtctggataaggccagagctaactggaaagcccacccagttcggcgacctg
aaggagatagtgaagctcagcgaggagcttgagatggttcttccgacgatagacttcgcc
cacgcccacgcaaggaacaggggaaagtgcaacagcgttgaagagtggcgcgagatgctg
tccttcatcgaagacagactcggcagagaggctttggacaacatgcacatccacatgagc
ggcatcgagtacactgacaaaggtgaaaagagacacctgcctctccaggagagcgacatg
aactgggaagacctgctcagagtcctgaaggagttcagggttaaaggcgtcgtcataagc
gagagcccgaacatagaggaagacgccctccttatgaagaagaagtatgaggagataaag
gcctaa
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