Thermococcus kodakarensis: TK0306
Help
Entry
TK0306 CDS
T00226
Name
(GenBank) DEAD/DEAH box RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tko
Thermococcus kodakarensis
Pathway
tko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK0306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tko03019
]
TK0306
03009 Ribosome biogenesis [BR:
tko03009
]
TK0306
Enzymes [BR:
tko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TK0306
Messenger RNA biogenesis [BR:
tko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TK0306
Ribosome biogenesis [BR:
tko03009
]
Prokaryotic type
rRNA helicases
TK0306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAD84495
UniProt:
Q5JFZ6
LinkDB
All DBs
Position
260707..261927
Genome browser
AA seq
406 aa
AA seq
DB search
MSFRELGLSSASVEAVERKGFSIPTDIQREVIPLLLSAESDIVGQSKTGSGKTAAFGLPI
LDSIDESIREVQALILTPTRELAIQVTDELRSLRGKRRIYVYSVYGGQPIGPQIRALEGG
VHIVVGTPGRVLDHINRGTLNLDGVRFFVLDEADRMLDMGFQEDIEAIFRATPKEKRVLM
FSATMPMDVLLLAKKYMRNPEVVIVSRDELVPGEVEQEYIEAVPHRRFDLLTKILSDESN
EFYGIVFCQTKAETRELSMRLRAAGFRAEALNGDMSQPAREKTFNRFKARKTKILVATDV
AARGLDVPEITHVINYSIPMNPEQYIHRIGRTGRMGKKGKAITFIAPGELRRFRYITKQA
GVEVKKSELSEGIPKEYRERLRQEELEGEYRGRWGSMKPRQRRRRY
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagttttagagaacttggactatccagtgcttcagttgaagcagttgaaagaaagggt
ttttcaatcccaacagacattcagagggaggtcatcccccttctgctgtccgctgagagc
gatattgtgggtcaatcaaaaacgggaagcggaaaaacagcagcttttggacttccgatt
ctggattcgatagatgaatccataagggaagttcaagcgttgattctaacccccacaagg
gagcttgccatacaggtcactgatgagctcaggtcgctcaggggcaaaaggaggatttac
gtttactccgtttacggcggacagccgatcggacctcaaataagggcccttgaggggggc
gtccacatagtagttggaactcctggacgggttctcgaccacataaacagaggtactctg
aacctcgatggggtcaggttcttcgtcctcgatgaggccgacaggatgctggacatgggc
ttccaggaggacatcgaagcaatcttcagggcaacccccaaggagaagagggtcctgatg
ttctcagccacgatgccgatggatgtcctcctgctggcaaagaagtacatgagaaacccc
gaggtagtcatcgtcagcagggacgagcttgtcccaggagaggttgagcaggagtacatc
gaagctgttccccacagaaggttcgaccttctcaccaagatactctcagatgagtctaat
gagttttacggcatagtgttctgtcagactaaagccgagacgagggaactctctatgagg
cttagggcggctggattcagggcagaggccctcaacggcgatatgagccagccggctaga
gagaagacgttcaatcgctttaaggccaggaaaactaagatactcgttgcgaccgatgta
gcagcgaggggacttgacgttccagagataacccacgttatcaactattcaatcccaatg
aaccccgaacagtacatccacaggattggaaggacagggagaatgggtaagaaaggaaag
gccataactttcatcgccccaggagaactgaggcgctttaggtacatcacaaagcaggcc
ggcgttgaggtcaagaagtccgaactcagcgagggtattcccaaagaataccgggagagg
ttgaggcaggaggagcttgaaggtgagtaccgcggcaggtgggggtcaatgaagccccgc
cagagaaggaggagatattga
DBGET
integrated database retrieval system
