KEGG   Thermococcus kodakarensis: TK0535
Entry
TK0535            CDS       T00226                                 
Name
(GenBank) DNA polymerase sliding clamp
  KO
K04802  proliferating cell nuclear antigen
Organism
tko  Thermococcus kodakarensis
Pathway
tko03030  DNA replication
tko03410  Base excision repair
tko03420  Nucleotide excision repair
tko03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tko00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TK0535
   03410 Base excision repair
    TK0535
   03420 Nucleotide excision repair
    TK0535
   03430 Mismatch repair
    TK0535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tko03032]
    TK0535
   03400 DNA repair and recombination proteins [BR:tko03400]
    TK0535
DNA replication proteins [BR:tko03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TK0535
DNA repair and recombination proteins [BR:tko03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TK0535
   MMR (mismatch excision repair)
    Other MMR factors
     TK0535
  TLS (translesion DNA synthesis) factors
   Other TLS factors
    TK0535
SSDB
Motif
Pfam: PCNA_N Rad1 PCNA_C Hus1 Rad9
Other DBs
NCBI-ProteinID: BAD84724
UniProt: Q5JF32
Structure
LinkDB
Position
456845..457594
AA seq 249 aa
MPFEVVFDGAKEFADLIATASNLIDEAAFKFTEEGISMRAMDPSRVVLIDLNLPESIFSK
YEVEEPETIGINMDQFKKILKRGKAKDTLILRKGDENFLEITFEGTAKRTFRLPLIDVEE
LELELPELPFTAKVVLLGEVLKEGIKDASLVSDAIKFIAKENEFTMKAEGETNEVEIRLT
LEDEGLLDLEVEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLT
FLLAPRVEE
NT seq 750 nt   +upstreamnt  +downstreamnt
atgccgttcgaagttgtttttgacggggccaaggagtttgcagacctgatagcgaccgca
agcaacctcatcgacgaggccgcctttaagttcactgaggaaggcataagcatgcgcgca
atggacccgagcagggtcgttctcattgacctcaacctgcccgaaagcatcttctccaag
tacgaggtcgaagagcccgagacaatcggcatcaacatggaccagttcaagaaaatcctc
aagcgcggcaaggcgaaagacaccctcatactcaggaagggcgacgagaacttccttgag
ataacttttgagggaaccgccaagaggacattcaggctccctctgatagatgtggaagag
cttgagctggagcttcccgagctcccgttcacggctaaggtagtcctcctcggtgaggtt
ctcaaggagggcataaaggacgcttccctcgtcagcgacgccatcaagttcatagcaaag
gagaacgagttcacaatgaaggccgagggcgagaccaacgaggtcgagataaggcttacc
cttgaggacgagggccttctcgaccttgaagtcgaggaagagaccaagagtgcctacggc
ataagatacctcagcgacatggtcaagggcatcgggaaggccgacgaagttatcctccgc
ttcggcaacgagatgccgctccagatggagtacatgatcagagacgagggcagactgacc
ttcctgctcgctccgcgcgttgaggagtga

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