Thermococcus kodakarensis: TK0566
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Entry
TK0566 CDS
T00226
Name
(GenBank) DEAD/DEAH box RNA helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
tko
Thermococcus kodakarensis
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tko03019
]
TK0566
Messenger RNA biogenesis [BR:
tko03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
TK0566
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DUF5814
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAD84755
UniProt:
Q5JF65
Structure
PDB
PDBj
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All DBs
Position
complement(486488..488986)
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AA seq
832 aa
AA seq
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MLFVVRPGRKKNELEAFFIENEPEKLSQMQNLKADRIYRFIMREGRLFKVLEGSQYRNPK
EIEKLLRQSRIVLVNADEWEDYFKRRLQNKRVEKAELCRLCLLEGRITVLTEGNRIKYHN
EYICERCAEDELKRELRFRFKSIAMFDQAKKLLERFRDLDKVLYAFDPRFDPTKHPEITK
WDELKAKHVKVEKIKVDELPVPEKFKEVLKSEGVRELLPVQSLAVKNGLLDGENLLVVSA
TASGKTLIGELAGVPKAMQGKKLLFLVPLVALANQKYEDFKRRYSKLGLRVAIRVGMSRI
KTKDELVVVDTGIDADIIVGTYEGIDYLLRAGRKIGNVGTIVIDEIHTLDDEERGPRLDG
LIARLRKLYPKAQFIGLSATVGNPDELAKELGLKLVLYDERPVDLERHIIIVRNESEKWR
HIANLCRAEAMRKSKQGYKGQSIVFTFSRKRTHELAAYLTSKGLKAKPYHSGLPYKQRKL
TEMEFLAQRLDVVVTTAALGAGVDFPASQVIFESLAMGNKWLSVREFHQMLGRAGRPLYH
EKGKVYLLVEPGRKYSAQMEGTEDEVAFKLLTAPIEPVQVEWSDELEQDNVLAHSCVFNR
LDVIEEVQSMCLGANQSAEKVLEKLEEFDFVKMKRPIVEVTPYGRAVSMSFLLPKEATFI
RGNLGKREARWIAVKLLPFENIYLSGTLQRELEGAVRGRLSANVFSPSFASILEELDKVI
PELSPNAAERLFTIYQEFFMCPEEDCTEYAMERVSNLIIELRRSGKHPTQIAEHFRKVYG
LIVYPGDVFTWLDGIVRKLEAIERIARVFRVRKTEEGAKILKREIEEGRMIR
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcgtcgtgagaccgggaaggaagaagaacgagcttgaggcgttcttcatcgag
aacgagcccgaaaagctatcccaaatgcagaaccttaaagctgaccggatttaccgcttc
ataatgagagaggggaggcttttcaaagtacttgagggaagtcagtaccggaatccgaag
gagatagagaagcttctccgccaatccagaatcgtgctcgtcaacgccgacgagtgggag
gactacttcaagaggaggctccagaacaagcgagtcgagaaagccgagctgtgccgcctc
tgtttgctggagggcaggataaccgtcctgactgagggcaaccgcataaagtaccacaac
gagtacatctgcgaacgctgtgccgaggacgagctgaagagagagctccgcttccgcttc
aaaagcatagccatgtttgaccaggccaaaaagcttcttgaacgttttcgcgaccttgat
aaagtcctctacgccttcgacccgcgctttgacccgactaaacacccggagataaccaag
tgggacgagctcaaggccaagcacgttaaagtcgagaagatcaaggtggacgagcttcca
gtccccgagaagttcaaggaagttctgaagtctgagggcgtaagagaactcctcccggtc
caaagcctcgccgtcaaaaacggtctcctcgatggagagaacctcctggttgtttccgca
acggccagcgggaagaccctaataggcgaactggcgggagtaccgaaggccatgcagggt
aaaaagctcctctttctagtcccgctggtagctttggccaaccagaagtacgaggacttc
aaaaggcgctactctaagctcggcctcagggtggcgataagagttggcatgagcaggata
aagaccaaggacgagctcgtggtcgttgatacggggatagatgctgacatcatcgtcgga
acatacgaaggcatagactacctcctccgcgccgggagaaagataggaaacgtcggaacc
atagtgatagatgagatacacacgctcgacgacgaggaacgcggaccaaggctggacggc
cttatagcgaggctgaggaagctctatccaaaggcccagttcatagggctctctgcaact
gtcggcaacccggacgagctggctaaggagctcggattaaaactagtgctctacgacgag
aggcccgttgacctggagaggcacataatcatagtgaggaacgagagcgagaagtggagg
cacatagctaacctgtgcagggccgaggccatgagaaagtctaagcagggctacaaggga
cagagcatagtctttacattctccagaaagaggacgcacgagctggccgcttatctgacg
agcaaggggctgaaggcgaagccctaccattccggccttccctacaagcagaggaagctc
acggaaatggagtttttggctcaaaggctcgacgtcgtggttacgacggcggcgctcgga
gcaggagtggactttcccgcttcccaggtaatctttgagagtctcgcgatgggcaacaag
tggctcagcgttagggagttccaccagatgctgggaagggccggaaggccgctctaccac
gagaagggtaaagtctaccttctcgtcgaacccggaaggaagtattcagcccagatggaa
ggaactgaagatgaggtcgccttcaagcttctgactgcacccatcgagccagtccaggtg
gagtggagtgacgagcttgagcaggacaacgtcttagctcactcctgcgtcttcaataga
ctggacgtcatcgaagaagtccaatctatgtgcttaggggcgaaccagagcgcagaaaaa
gtccttgaaaagctcgaggagttcgacttcgtgaagatgaagcggccgatcgttgaggtt
accccctacggaagggcagtcagcatgagcttcctcctgccgaaggaggcaaccttcatc
aggggaaaccttggaaagagggaagccaggtggatagcggtcaagctccttccgttcgag
aacatctacctcagcggaactctccagagagagcttgagggggcagttagaggaagactg
agcgccaacgttttctcaccgagcttcgcctcgatccttgaagaactcgataaggttatc
cccgagctgagcccaaatgccgctgagaggctgttcaccatctatcaggagttcttcatg
tgccctgaggaggactgcaccgaatatgccatggagagggtgagcaacctgataattgag
ctcaggaggagcggaaagcacccgacccagatagcggagcacttcaggaaggtctatggg
ctgatagtctatccgggcgacgtcttcacgtggctcgacggcatagttaggaagctcgaa
gccatcgagaggatagcgagggtcttccgcgtgagaaagaccgaggagggggcgaagata
ctgaagagggagatagaagaagggaggatgatacgctaa
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