Thermococcus kodakarensis: TK1083
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Entry
TK1083 CDS
T00226
Name
(GenBank) DNA-directed RNA polymerase, subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
tko
Thermococcus kodakarensis
Pathway
tko03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TK1083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tko03021
]
TK1083
Enzymes [BR:
tko01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TK1083
Transcription machinery [BR:
tko03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
TK1083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zf_2nd_IFT121
DUF5817
Auto_anti-p27
Zn_ribbon_NOB1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BAD85272
UniProt:
Q5JE32
Structure
PDB
PDBj
LinkDB
All DBs
Position
complement(949604..952975)
Genome browser
AA seq
1123 aa
AA seq
DB search
MSRGVTVTEPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDI
PNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVE
VRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTL
VERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTD
KEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDN
NLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFR
VAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGR
TGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLV
KNLALMSQITTGIPEREVREYLMKMGVVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVE
RIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIK
NGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYP
EHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPA
GQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSP
NIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETS
VTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQED
MPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKE
LEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQP
TEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGK
VYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLKDRV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcaggggagttaccgtaaccgagcccactctaactcctgatgagctctggcttgtt
atggagtcctactggaaggagaagggattcgtcaggcagcatcttgactcgtacaacgct
ttcatcgatcacggccttcaggatgttgtaaacgagttcggggaagtcgttccagacata
ccgaacttcaaggtcaagttcgggaagatccgcataggacagcccgagttccaggaggcc
cagggccagaggagacccctctacccgatggacgccaggataaggaacttgacatattcc
gccccgctctaccttgagatgatacccgtcgtgaacgggattgagcaggagcccgtcgag
gtcaggattggagagctcccgataatgctcaagtccaaggcctgcaggctctacggtttg
agcgacgaggaactcatcaagctcggcgaggacccgaaggaccctggaggatacttcatc
atcaacggttctgagagggttatagtttctatcgaagacctcgccccgaacaagaccctc
gttgagagggatgagagacagaacaaggttgttgccaaggtcttctcgtacagacacggt
tacagagcgctcattaccgttgaaagaaagaaggacggcattctctacgttacgataccc
aacgttccaaagcctgtcaagttcgtctatgtgatgcgcgccctcggtctcctcacagat
aaggagatagtcgaggcagtcagcgacgacccgaggatacagcaggtactctttgacaac
ctcgaggacgcgagcgacataagcacccaggaggaggcccttgactacatcggcaggctc
gccctcccaggacaacccaaggagtacaggctcaggagggccgagcacatcatagacaac
aaccttctcccccatatgggtgttgatcccgaaaacaggcgcgccaaagcctactatctc
ggcatgatggccctcaaggttctcgaactttcacttggtctccgcggtgaagacgataag
gaccactacgccaacaagaggctcaagctcgctggagacctcctcaaagacctcttccgc
gtcgcctttggtcagctcgtcaaggacatgcagtaccagatgaccaagacctaccagagg
aagggcgagaggtacacctttgagaacatccagcgctttgtcaggaactccataaggccc
gacgtcctgagcgagaggattgaacacgcattggctaccggctcctggccgggcggaagg
acgggtgtcagccagctcctcgacaggaccaactacatgtcaaccctttcacacctcagg
cgcgttacctccccgctcagcagggatcagccgcacttcgaggcccgtgaccttcacgga
acccactggggtagaatctgtccgacagagactccagaaggtccgaactgtggtctcgtt
aagaaccttgccctcatgtcccagataaccacaggaattcccgagagggaagttagggaa
tacctaatgaagatgggcgtagtccccatagaggagagaaggcccgcgcctggcctgtat
cgcgtttaccttaacggtgtccttattggaactgttgaagacggcagaaagcttgttgag
aggataagggccgatagaagggctggaaagataagcgacgtcatcaacgttgccctctac
gaggacgaggaagtcaaggaagtctacataaacagcgatgacggtagggtgagaagaccc
ctcatcgtcgtcgagaacggaaagccaaagctcacgagggagcacgttgagggcataaag
aacggcacccttacctggagcgacctcatcagaatgggcgtcatcgagtacctcgacgct
gaggaagaggagaacgcctacgtggcaacctggccctgggaagtgaccgaggagcacact
cacctcgagctcatgcccgctgccatcctcggtatccccgcttcactcgtcccgtatccg
gagcacaacgccgccccgcgtaacacctacggagcgggtatggccaagcagagcctcggt
ctcggctgggccaacttcaggatcagagttgacacccgcggtcacctcatgcactacccg
caggttccgctcgtcaactcgaggataatgaaggccgttggattcgaggacaggcccgct
ggtcagaacttcgtggtggctgtcctcagctaccacggatacaacatggaggatgccgtc
atcattaacaaggcctcgatagagcgcggactggcgaggtcaaccttcttcagaacctac
gaggccgaggagaagcgctacctcggtggtcagaaggacaacttcgaggttccgtcaccg
aacatccagggatatctcggcgagaagtactaccgccacctcgacgaggacggtctcatc
ttccccgagtcaaaggtcgagggcaaggacgtcctcgttggaaggacctccccgccgagg
ttcattgaggagcagagcagcctcggctcaatggttctccagggaaggagggaaacgagc
gtcaccgtcaggccgagcgagaagggtgtggttgacaaggtcatagtcaccgagaccggc
gacggaacgaagctggtcaaggtcaccgtgagagacctccgcatacctgagctgggtgac
aagttcgcatcaaggcacggtcagaagggtgtcataggtctcatcgtcccgcaggaggat
atgccctggaccgagagcggaatcgttccagacctcatcgtcaacccgcacggtatcccg
agccgtatgaccgtcggacagctgattgaggccataggtggaaaggtagcttcactaacg
ggcaggcgcgttgacggtactgccttcatcggagagcctgaggagaagctcaggaaggag
cttgaggagctcggcttcaagcacagcggaagagaaattatgtacgacggcataaccgga
agaagacttgaggcggacatcttcatcggcgtcatctactaccagaggctccaccacatg
gtagcggacaagatgcacgcgagaagcaggggtccggttcaggttctcaccaagcagccg
accgagggaagggccagggaaggcggtctcaggttcggtgagatggagcgtgacgtcctc
atcggccacggcgctgccatgctgctcatcgagcgtctccttgaggaaagcgacaagaca
gaggtctgggtctgtgagagctgtggacacctcgcactagaggacaagcgcagaggaaaa
gtctactgccctgtctgtggtgaggacgagaggataagcaaggtcgagatgagctacgcc
ttcaaactgttgctggatgagctgaaggcgatggttattaggccgtctctcaggctgaag
gatagggtgtga
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