Thermococcus kodakarensis: TK1157
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Entry
TK1157 CDS
T00226
Name
(GenBank) CDC48/VCP homolog, AAA superfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tko
Thermococcus kodakarensis
Pathway
tko04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
TK1157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tko03019
]
TK1157
03009 Ribosome biogenesis [BR:
tko03009
]
TK1157
04131 Membrane trafficking [BR:
tko04131
]
TK1157
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tko04147
]
TK1157
Messenger RNA biogenesis [BR:
tko03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
TK1157
Ribosome biogenesis [BR:
tko03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
TK1157
Membrane trafficking [BR:
tko04131
]
SNARE
SNARE associated proteins
Others
TK1157
Autophagy
Aggrephagy
Other aggrephagy associated proteins
TK1157
Exosome [BR:
tko04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TK1157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_22
AAA_5
AAA_14
TIP49
AAA_33
nSTAND3
Vps4_C
RNA_helicase
AAA_28
AAA_24
NPHP3_N
IstB_IS21
Mg_chelatase
AAA_18
Sigma54_activat
AAA_7
AAA_25
DUF815
Bac_DnaA
ATPase_2
ABC_tran
AAA_17
Parvo_NS1
TsaE
NB-ARC
AAA_lid_PRS2_C
SLFN-g3_helicase
AAA_3
PhoH
Zeta_toxin
ATPase
Zot
SPO22
Motif
Other DBs
NCBI-ProteinID:
BAD85346
UniProt:
Q5JE98
LinkDB
All DBs
Position
1014783..1017173
Genome browser
AA seq
796 aa
AA seq
DB search
MSERREVKLKVASAYQRDVGRGIVRIDRKAMRELGVQSGDIVEIIGTKNTAAVVWPAYPE
DEGLGIIRMDGTIRKNAGVGLGDEVTVRKADVKEAKKVIVAPTEPIRFGADFVEWLHSRL
VGRPVVRGDYIKIGILGQELTFVVTATTPAGIVQITEFTDFQVSEKPVKEVSKATALGVT
YEDIGGLKDVIQKVREMIELPLKHPELFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA
NAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDSIAPKREETHGEVEK
RVVSQLLTLMDGLKSRGKVIVIGATNRPDAIDPALRRPGRFDREIEVGVPDKQGRKEILQ
IHTRGMPIEPEFRRDKVIEILEELEKNDTYREAAERAIMKVKKAKDEEEIRRILRETDEK
LYEEVRAKLIDALLDELAEVTHGFVGADLAALAREAAMAALRRLINEGKIDFEAEYIPKE
VLDELKVTRRDFYEALKMVEPSALREVLLEVPNVRWDDIGGLEDVKQELREAVEWPLKYP
EAFMGLGITPPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIR
EIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGAT
NRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRRVPLAGDVDLRELAKKTEGYT
GADIAAVVREAAMLAMRRALQEGIIRPGMKADEIRGKVKVTMKDFEEALKKIGPSVSKET
MEYYRKIQEQFKQARG
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagaggagagaggtcaagctcaaggttgcctctgcctaccagagggacgttggc
agggggatcgtgaggattgacaggaaagccatgcgcgagcttggcgtccagtcaggtgac
atagtcgagatcataggtaccaagaacaccgctgcagttgtctggccagcctatccagag
gacgaggggcttggcatcataaggatggacggtacgatcaggaagaacgccggtgttggt
ctcggcgacgaggtcaccgtgagaaaggccgacgtcaaggaggcaaagaaggtcatagtc
gctccgactgagccgatacgcttcggcgctgacttcgtcgagtggctccacagcaggctc
gtcggaaggcccgtagtcaggggagactacatcaagatcggcatactcggccaggagctg
acattcgtagttaccgccacaactccagcggggatcgttcagataaccgagttcaccgac
ttccaggtgagcgagaagccagttaaggaggtcagcaaggcaaccgccctcggagtgacc
tacgaggacataggtggcctcaaggacgtcatccagaaggttagggagatgatagagctc
ccgctcaagcacccggagctcttcgagaagctcggcattgagccgcctaagggtgtgctc
ctctacggaccaccgggaacgggtaagacactcctggctaaggccgttgccaacgaagcc
aacgctcacttcatagccatcaacggaccggaaataatgagcaagtactacggcgagagc
gaggagaggcttagggaggtcttcaaggaggctgaggagaacgcgccggcgataatcttc
attgacgagatcgacagcattgcgccgaagagagaggagacccacggtgaggtcgagaag
agggttgtcagccagctgctaacgctaatggacggcctcaagagccgcggaaaggtcata
gtcatcggtgccaccaacaggccggacgcgattgacccggccctgaggaggcctggaagg
ttcgacagggaaattgaggtcggcgttcccgacaagcagggcagaaaggagatactccag
atccacaccagaggaatgccgatcgagcccgagttcaggagggacaaggtaatcgagata
ctcgaggagcttgagaagaacgacacctaccgcgaggccgctgagagggctatcatgaag
gtcaagaaggccaaagacgaagaggagatcaggaggatcctcagggagaccgacgagaag
ctctacgaggaggtcagggcgaagcttatcgatgcactcctcgacgagctggctgaggtt
acgcacggcttcgtcggtgccgacctggcagcactcgccagggaggctgcaatggcagct
ctcaggaggctcatcaacgagggcaagatcgacttcgaggccgagtacataccgaaggaa
gtcctcgacgagctcaaggtcacgaggagggacttctacgaggccctcaagatggtcgag
ccgtcagctctcagagaggtgctcctggaggttccaaacgtccgctgggacgacatcggc
ggccttgaagatgtcaagcaggagctcagagaggcagtcgagtggcctctcaagtatccc
gaggcattcatgggtctcggcataacaccgccgaagggaatactcctctacggtccgccg
ggaaccggtaagactctcctcgccaaggcagtcgccaacgagagcgaggccaacttcata
gcaatcaagggtccagaggtgctcagtaagtgggtcggtgagagcgagaagaacatccgc
gagatcttcaggaaggctcgccaggccgcaccaaccgtgatattcatcgacgagattgac
gccatcgccccgagaagaggaaccgacgtgaacagggtcactgacaggttgatcaaccag
ctgctcactgagatggacggaatccaggagaacagtggcgtggtcgtcattggtgccacc
aacaggccggacattatcgatccagcactcctcaggccaggaaggttcgacaggctgata
cttgtaccagctccagacgagaaggccaggctcgaaatattcaaagtccacaccagaaga
gtaccgcttgcaggtgatgttgaccttagggagctcgccaagaagaccgaaggctacacc
ggcgcagacatagcggcagtggtcagggaggctgcgatgctcgccatgaggagggccctg
caggagggcatcataagacccggcatgaaggccgacgagataagggggaaggtcaaggtc
accatgaaggacttcgaggaggccctcaagaagatcgggccgtcagtgagcaaggagacc
atggagtactacaggaagatccaggagcagttcaaacaggctcgcggatga
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