Thermococcus kodakarensis: TK1169
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Entry
TK1169 CDS
T00226
Name
(GenBank) RNA-binding protein, containing S1 domain
KO
K07573
exosome complex component CSL4
Organism
tko
Thermococcus kodakarensis
Pathway
tko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK1169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tko03019
]
TK1169
Messenger RNA biogenesis [BR:
tko03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TK1169
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TK1169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
CvfB_2nd
OB_RRP5_4th
Auto_anti-p27
RRP4_S1
HVO_2753_ZBP
Zn_ribbon_PaaD
Prok-RING_1
A2L_zn_ribbon
DZR_2
Zn_ribbon_3
Zn_ribbon_NOB1
Zn_ribbon_IS1595
Trm112p
Motif
Other DBs
NCBI-ProteinID:
BAD85358
UniProt:
Q5JE86
LinkDB
All DBs
Position
complement(1026928..1027524)
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AA seq
198 aa
AA seq
DB search
MDEKKTVKNGDLVLPGDYLGVIEEFLPGDGVREENGELYATRAGKVRIDSDKMEISVEPV
TDVPPLPRVGDVVIGRVVEVKPQAVIVQIISIEGRENDREIATSKLAGIHISEIKEGFVE
DITKEFKIGDVIRARVIANEKSPIQLSTKGPDLGVVYALCSRCRTPLIRRGDKLICPRCG
NVETRKLSSLYRKLKVSL
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggatgagaaaaagaccgtgaagaacggcgacctcgtactgcccggggattatcttggt
gttatcgaggagttccttcctggagatggtgtcagggaggagaacggtgagctttacgcc
actagggctggtaaagtaagaatagactccgacaaaatggagataagcgttgaacccgta
accgacgtcccgccgcttcccagggttggagacgtggtcataggtagggtcgttgaggtg
aagcctcaggccgtaatagtccagatcatcagcattgagggcagggagaacgacagggag
atagccacttcaaagctagcagggatacacatctccgagataaaggagggcttcgtcgag
gacatcaccaaggagtttaagattggggacgtaataagggcgagggtaatcgccaacgag
aagagtccgatacagctgagtacgaagggtcctgatctgggtgtcgtctatgccctctgc
tcccgctgcaggacgccgctgataaggcgcggcgacaagcttatctgcccgcgctgtgga
aacgtcgagacgagaaagctttcatcactgtatagaaaactgaaggtgtctctatga
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