Thermococcus kodakarensis: TK1280
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Entry
TK1280 CDS
T00226
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
tko
Thermococcus kodakarensis
Pathway
tko03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TK1280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tko03021
]
TK1280
Transcription machinery [BR:
tko03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
TK1280
Prokaryotic type
Archaeal type
TFB
TK1280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
HARE-HTH
BRF2-like_C_cyclin_rpt
Sigma70_r4
RB_B
HTH_Tnp_ISL3
UPF0253
RUBY_RBDX
Zn_ribbon_IS1595
Zn_Ribbon_Prim
ORC6
FtrD-like
Zn_ribbon_tTFIIB
YceG
FYDLN_acid
Ribosomal_S27e
Zn_ribbon_LysW
ADK_lid
Trm112p
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAD85469
UniProt:
Q5JGN1
LinkDB
All DBs
Position
1120451..1121353
Genome browser
AA seq
300 aa
AA seq
DB search
MSGKRVCPVCGSTEFIYDPSRGEIVCKVCGYVIEENVVDEGPEWRAFDPGQREKRARVGA
PESILLHDKGLSTDIGIDRSLTGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRLA
SNLSLPKHVEEEAARLYREAVRKGLIRGRSIEAVIAACVYAACRLLKVPRTLDEIADVSR
VDKKEIGRSFRFIARHLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILEEAYQRG
LTSGKSPAGLVAAALYIASLMEGEKRTQREVAEVARVTEVTVRNRYKELVEKLNLKVPIA
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgggaagagagtctgtcccgtgtgcggctcaacggagttcatatacgaccccagc
aggggtgaaatagtctgtaaggtttgcggttacgttatcgaggagaacgtggtcgatgag
ggccccgagtggagggcctttgatccgggccagagagagaagagggcgcgcgtcggtgct
cccgagagcatactgctccacgacaagggactttccaccgacattggaatagacaggtcg
ctaactggcttaatgcgcgagaagatgtacaggctgaggaagtggcagtcccgtctcagg
gtcagcgacgccgctgagagaaacctcgccttcgccctcagcgaacttgataggctcgcg
agcaatctaagcctcccgaagcacgtcgaggaagaggccgcaaggctctaccgtgaagca
gtgaggaaaggactcataaggggacgctccatagaagccgtcatagccgcctgtgtttac
gccgcctgcaggcttctgaaggtcccgagaacccttgatgagattgccgacgtctctcgc
gttgataagaaggagattggaaggagcttccgcttcatagcgaggcacctgaacctcact
ccaaagaagctcttcgtcaagcccacggattacgtgaacaagttcgccgatgagctgggt
ctcagcgagaaggtcaggaggagggccatagagatcctcgaagaggcctaccagagaggc
ctcactagcggaaagagtccagcaggattggtggcagccgccctctatatcgcgagcctc
atggaaggggagaagaggacccagagggaagtggcggaggttgccagggtcaccgaggtt
accgtgaggaacaggtataaagagctggtagaaaagctgaacctcaaggttccgatagcc
tga
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