KEGG   Thermococcus kodakarensis: TK1281
Entry
TK1281            CDS       T00226                                 
Name
(GenBank) flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
tko  Thermococcus kodakarensis
Pathway
tko03030  DNA replication
tko03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:tko00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TK1281
   03410 Base excision repair
    TK1281
   03450 Non-homologous end-joining
    TK1281
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tko03032]
    TK1281
   03400 DNA repair and recombination proteins [BR:tko03400]
    TK1281
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tko04147]
    TK1281
DNA replication proteins [BR:tko03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TK1281
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TK1281
DNA repair and recombination proteins [BR:tko03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TK1281
Exosome [BR:tko04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   TK1281
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc_N 5_3_exonuc TPR_8
Other DBs
NCBI-ProteinID: BAD85470
UniProt: Q5JGN0
Structure
LinkDB
Position
complement(1121354..1122376)
AA seq 340 aa
MGVQIGELIPRKEIELESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSG
FFYRTINLMEAGIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKY
AMRATRVNEELINDAKKLLELMGIPVVQAPSEGEAQAAYMAAKKAVYASASQDYDSLLFG
APRLVRNLTITGRRKLPGKNVYVEVKPELVVLEEVLKELGIDREKLIELAILVGTDYNPG
GIKGIGPKKALTIVKRTKDPLAKYQKESDVDLYAIKEFFLNPPVTDDYELKWREPDEEGI
LKFLCDEHDFSEERVKNGLERLKKAVKAGKQRTLESWFGR
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgggagtccagataggtgagctgataccgagaaaggaaatcgagctggaaagtctctac
ggcaagaaggttgccatagacgccttcaacgccatgtaccagttcctctcaaccataagg
cagcgcgatggaactccactaatggactcacagggcaggatcacttctcacctcagcggc
ttcttctacagaaccatcaacctgatggaagctggtataaagccggcctacgtcttcgac
ggcaagccaccggatttcaagaagagggagcttgaaaagaggcgtgaggcaagggaagaa
gcagaggagaagtggtacgaggcccttgagaagggtgaccttgaggaggccaagaagtac
gcgatgcgcgccacgagggtgaacgaggagctgataaacgacgccaaaaagctccttgag
ctcatgggtattccagtcgttcaggccccgagtgagggagaagctcaagcggcttacatg
gccgccaaaaaagctgtctatgcctctgcaagccaggactacgactcactcctcttcggt
gcgccgaggctcgtaaggaacctcacgataactgggaggagaaaacttcccggaaagaac
gtttacgtcgaggtcaagccggagctggtggttctggaagaggttcttaaggagctcggg
atagacagggagaagctcatcgagctggccattctggtcgggactgactacaaccctggc
ggaataaaggggatagggccgaagaaagccttaacaatcgttaagagaacgaaagacccg
ctggccaagtaccagaaggagagcgacgttgacctctacgccataaaggagttcttccta
aatccccctgttactgacgactacgagcttaagtggcgcgagccggacgaggaagggatc
ctaaagttcctctgcgacgagcacgacttcagcgaggagcgcgttaagaacggcctcgaa
aggctgaaaaaagcggtaaaagcgggaaagcagagaaccctagagagctggttcggtcga
tag

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