Thermococcus kodakarensis: TK1469
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Entry
TK1469 CDS
T00226
Name
(GenBank) hydrolase, metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tko
Thermococcus kodakarensis
Pathway
tko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TK1469
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tko03019
]
TK1469
Messenger RNA biogenesis [BR:
tko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TK1469
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
BAD85658
UniProt:
Q5JH57
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All DBs
Position
complement(1300230..1301564)
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AA seq
444 aa
AA seq
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MIRVYTISGYEEVGKNMTAVGYSDGRKEEVVIIDMGIRLDRVLIHEDVNIQQFPTKELQR
LGAIPDDSILRNKKVVAITFTHGHLDHIGAVGKIAPHYPDVPIYGTPYTIKLAKSEVKSE
QYFEVKNPMYETEFGEIVQVSENLAIEFVRITHSIPQAAMVVVHTPEGAVVHTGDFKFDN
NNPLGERPDYKRLKELGKEGVKVLIAESTRVAEPTKTPSEAVAQMLLEDFFLYEGMDEKG
LIATTFASHIARLQELIWIANKMGRQAVFVGRSLAKYTGIAKQLGLIKMKGARAVRSPNA
IKKVLAEVSGARENYLLVVTGHQGEPGAVLTRMANGELYDIGKQDTVVFSAGTIPNPLNR
AQRYILETKLKMKGVRMIKDLHVSGHASREDHRYLLRMLNPENIVPAHGEFRMLTHYAEL
AEEEGYLIGRDVFVSRNGYTVEIE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgattagagtttacacaatcagcggctacgaggaagtcggtaagaacatgaccgccgtc
ggctattctgacggcaggaaagaggaagtcgttataattgacatgggcataaggctcgac
cgcgttctcatccacgaggatgtcaacattcagcagttcccgaccaaggaactccagagg
ctcggcgcaatacccgatgattcaattctgagaaacaagaaggtcgtggcgataacgttc
acccacggccacctcgaccacattggagcggtcgggaaaatagcacctcactacccggac
gttccgatatacgggactccttacacgataaagctggccaagagcgaggtcaagagcgag
cagtacttcgaggtcaagaacccgatgtacgaaacggaattcggcgagatagtccaggtg
agcgagaacctggcgatagagttcgtacggataactcactcgatacctcaggcggcgatg
gtggttgtccacactcccgagggtgcggtcgtccacaccggcgacttcaagttcgacaac
aacaacccgctcggtgagaggcctgactacaaacgcctaaaggagctcggcaaggagggc
gtcaaggttctcatagccgaatcaacccgcgtcgcagagccgactaagacaccgagcgag
gccgttgcccagatgctcttggaagacttcttcctctacgagggtatggacgagaagggt
ctcatagcgaccacctttgccagccatatagcccgtctccaggagcttatctggatagcc
aacaagatgggcaggcaggccgtcttcgttggcaggtctctggcgaagtacaccggaata
gccaaacagctcggcctgataaagatgaagggagcgagggcagtcagaagcccgaatgcc
ataaagaaagtcctcgctgaagtctctggagcgagggagaactacctcctcgttgttacg
ggccatcagggtgaaccgggggcagtattgaccaggatggccaacggtgagctctacgac
ataggaaagcaggatacggtcgttttctccgctggaacgataccgaaccccctcaacagg
gcccagcgctacatcctggagacaaaactcaagatgaagggcgtcaggatgataaaagat
ctccacgtctccggccacgcgagcagggaagaccaccgctacctcctcaggatgctcaac
cctgagaacatcgttccggcccacggcgagttcaggatgctcacccattacgccgagctt
gccgaggaagagggctacctgatcggcagagatgtcttcgtgtcgaggaacggatacacg
gttgagattgagtga
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