Thermococcus kodakarensis: TK2215
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Entry
TK2215 CDS
T00226
Name
(GenBank) archaeal tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
tko
Thermococcus kodakarensis
Brite
KEGG Orthology (KO) [BR:
tko00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tko03016
]
TK2215
Enzymes [BR:
tko01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
TK2215
Transfer RNA biogenesis [BR:
tko03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
TK2215
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
tRNA_int_end_N2
Sen15
Motif
Other DBs
NCBI-ProteinID:
BAD86404
UniProt:
Q5JHP5
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All DBs
Position
2003076..2003582
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AA seq
168 aa
AA seq
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MIIFYLSGDRVFSTDQNAINGLYNKRYFGKVVEGKLFLSLLEAAYLVERGKIEVRDGKRK
LSLEEIMNLGRARDELFDAKYLVYKDLRDRGYTVKSGLKFGSHFRVYRRGMEEHSEWLVW
VVPENSRLSPNDITARVRVAHGVRKNMIMAIVDEDADVTYYKVEWVKF
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgataatcttctacctgagcggcgacagggtcttctcaaccgatcagaacgcgataaac
gggctctacaacaagcgatactttggaaaggtcgttgagggtaagctgtttctatctctt
ctagaagcggcctatctagtggagcgcggcaagattgaggtcagggacggcaagaggaag
ctctcgcttgaggagataatgaacctcggcagggccagggatgagctctttgatgcaaaa
tatctcgtctacaaggacctgagagataggggctacactgtgaagtccggcctgaagttc
ggctcccacttcagggtctaccggaggggaatggaagagcactccgagtggctcgtctgg
gttgtccccgagaactccaggttaagtccaaacgacataaccgctcgcgtcagggtggct
cacggcgtgaggaagaacatgataatggcgatagttgacgaggacgccgacgtgacctac
tacaaggtcgagtgggtgaagttctag
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