Tetragenococcus koreensis: C7K43_09700
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Entry
C7K43_09700 CDS
T05710
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tkr
Tetragenococcus koreensis
Pathway
tkr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tkr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7K43_09700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tkr03019
]
C7K43_09700
03009 Ribosome biogenesis [BR:
tkr03009
]
C7K43_09700
Enzymes [BR:
tkr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7K43_09700
Messenger RNA biogenesis [BR:
tkr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7K43_09700
Ribosome biogenesis [BR:
tkr03009
]
Prokaryotic type
rRNA helicases
C7K43_09700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AYW46174
LinkDB
All DBs
Position
complement(2010196..2011755)
Genome browser
AA seq
519 aa
AA seq
DB search
MFLKRRIYLKFKELDLSQVLLDAVQKSGFEEATPIQEETIPLAMQGKDVIGQAQTGTGKT
AAFGLPMLEKIDTNKKQIQGLVISPTRELAIQTQEELFRLGKEKKIKVQAVYGGADIGRQ
IRQLKDHPHIVVGTPGRMLDHINRRTLKLSTVETLVLDEADEMLNMGFLEDIEKIIAQVP
DKRQTLLFSATMPKEIKSIGVKFMKDPHHVQIKAKEMTADSIDQYYVRAKDYEKFDIMTR
LFDVQLPELTLIFGRTKRRVDEIARGLEARGYKAEGIHGDLSQQKRMSVLRSFKKGQLDI
LVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGVSVTFVTPNEMNYLH
VIENLTKKRMTPMRPPSDKEAFKGQVTQAVETIDEKMAENGLDKYSKEANDLLERYSAQD
LAALLLKTLAKDPADVVPVKITPERPLPKGKGKQNKGQGRRKNYSRDRDNGNYRQDRRKN
NKDYHKKNNKGPGNKEGQPKKSRRGSEKKQDFVIRNGKN
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgtttctaaagaggaggatttatttgaaatttaaagaactagatttatcacaggtctta
ttagacgctgtacaaaaaagcggttttgaagaagcaacaccgattcaagaagaaaccatt
ccattagccatgcaaggtaaagatgtgattggacaggcgcaaacaggtactggtaaaaca
gctgcttttggtttgcctatgttagaaaaaatcgatactaacaaaaaacaaattcaagga
ttggttatttcgccaacgcgggagctagcgattcaaacacaagaagaactattccgttta
ggtaaagagaaaaaaattaaggtacaagcagtctacggtggtgctgatattggacgtcaa
attcgccaattaaaagatcatccacatattgtagtaggaacacctggccggatgcttgac
catatcaaccgccgtacgttgaagctttctaccgtggaaacattggtgctggatgaagca
gatgaaatgctgaatatgggctttttggaagatatcgaaaaaattattgcccaagtccct
gataaacgacaaacattactgttttcagctaccatgcctaaagaaattaaatctatcggt
gtgaaatttatgaaagatccacatcacgttcagatcaaagcaaaagaaatgactgctgat
tcgattgatcaatattatgtacgtgccaaagattatgaaaaattcgacattatgactcga
ctttttgatgttcaattaccagaattaacgcttatttttggtcgtacaaaacgtcgtgtg
gatgaaatagcacgcggattagaagcacgtggctacaaagcagaaggaatccacggtgac
ctttcgcaacaaaaacgtatgagcgtattacggtcatttaaaaaaggtcaactggatatt
ttagttgcaacagacgtggctgctagaggtttggatatttctggtgtgacgcatgtttat
aattatgatatcccacaagatccggaaagttatgttcaccgtatcggtcggacaggacgt
gctggaaaaagcggtgtttctgttacttttgtgacgccaaatgaaatgaattatctacat
gttattgaaaacttgacgaaaaaacgtatgacgccgatgcgtccaccttctgataaggaa
gcgtttaaaggacaagttactcaagcggtagaaacgatcgacgaaaaaatggctgaaaat
ggtttggacaagtatagcaaagaagctaatgacttgttagaacgttattcagcacaagat
ctagctgctttattattgaagaccttagccaaagatcctgctgacgttgtgccagtaaaa
attactccggaacgtcctttacctaagggcaagggtaaacaaaacaaaggacaaggccgc
cgtaagaactactcacgtgaccgtgataatggaaattatcggcaagatcgtcgtaaaaat
aataaagactaccataagaaaaataataagggacctggtaataaagaaggtcaacctaaa
aagagccgacgtggaagtgaaaagaaacaagattttgttatccgaaacggcaaaaattaa
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