Tetragenococcus koreensis: C7K43_10115
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Entry
C7K43_10115 CDS
T05710
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tkr
Tetragenococcus koreensis
Pathway
tkr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tkr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7K43_10115 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tkr03021
]
C7K43_10115 (rpoC)
03400 DNA repair and recombination proteins [BR:
tkr03400
]
C7K43_10115 (rpoC)
Enzymes [BR:
tkr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7K43_10115 (rpoC)
Transcription machinery [BR:
tkr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7K43_10115 (rpoC)
DNA repair and recombination proteins [BR:
tkr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7K43_10115 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AYW46251
LinkDB
All DBs
Position
complement(2098855..2102514)
Genome browser
AA seq
1219 aa
AA seq
DB search
MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIDPGNTSLEKKQLLTEREYREKREQYGQEFNAAMGAEAIRQLLD
SVDLDSEADELKETLKSASGQKRTRAIRRLDILEAFRTSGNEPSWMVMDVIPIVPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVICVGPFLKMYQCGLPKE
MAIELFKPFVMRELVKRELASNIKNAKRKIERQEDDVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCEAYNADFDGDQMAVHVPLNDEAQAEARLMMLAAQHIL
NPKDGKPVVTPSQDMVLGNYYLTLEEAGREGEGMIFRDLDEAVAAWKNGYVHLHSRVAVD
PNRLGDKPLTDFQKDRLLITTVGKIIFNSIMPPEFPYLNEPTDFNLTVQTPDKYFVEAGT
DIPAHIKEQDLIGPFKKGNLGDIIAEVFKRFKVTETSRMLDRMKDLGYKHSTHAGITVGI
ADITVLQDKDDIISEAHKQVANVSKQFRRGLITDDERYERVIDVWNEAKDKIQLKLMKSL
GTQNPIYMMSDSGARGNISNFTQLAGMRGLMAAPSGKIMELPIISNFREGLTVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIRDDDCGTDRGLDIEAIKEGNEIIEPLE
ERLAGRYTSKAVYHPETGEAIVGADHLISEVEAKQIVNAGIEKVSIRSAFTCNSKHGVCR
HCYGRNLATGTEVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARNPKGEAVITEVTGEVTEIAEDAATRAKEVTITGETDTRTYTVPYTARMKVEEGERIH
RGAPLTEGSIDPKHLLQVRDVISVENYLLHEVQRVYRMQGVEIGDKHVEVMVRQMLRKVR
VMDPGDTDILPGTMMDIADFRDQNYKTLVAGGIPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKQDPLLGLKENVIIGKIIPAGTGMPRYRNMEPKEVNTASENVYSIS
DIEAQMAAEDALNETQSEK
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaattcgaaagtatgcaaataggcttggcttctcccgaaaaaatc
agaagctggtcttatggtgaagtaaaaaaacctgagactattaattatcgtacattaaaa
cctgaacgtgaagggttatttgacgaacgcattttcggccctactaaagactgggagtgt
gcttgtggtaaatacaagcgaattcgttataaagggatcgtttgtgaccgttgcggtgta
gaagttactcgttcgaaagttcgtcgtgaacggatgggacatattgaactagctgctcca
gtatcacatatctggtattttaaaggtataccatctcgtatgggactcgttttagacatg
agcccacgcgcattagaagaaattatctattttgcttcttatgttgtgattgatccaggt
aatactagtttagaaaagaaacaattattgactgagcgcgaataccgtgaaaaacgcgaa
caatatggtcaagaattcaacgcggcaatgggtgctgaagctattagacaactattggat
agcgtagatttagacagtgaagcagatgaattaaaagaaacattgaaatcagcttcaggg
caaaaacggacacgagcaattcgccgtttggacattttggaagctttccgtacctctgga
aatgaacctagctggatggttatggacgttattcctattgttccaccggatttacgtcct
atggtgcaattagaaggtggtcgttttgctacttctgatttaaatgatttgtatcgtcgt
gttattaaccgtaataaccgtttaaaacgtctgctagatttgaatgcgcctaatatcatt
gtgcaaaatgaaaaaaggatgctacaagaagcagtagatgccttgattgataatggtcgc
cgaggccgccctgttgcaggtccaggaaatcgtccattaaaatcactttctcatatgcta
aaagggaaacaaggacgtttccgtcaaaacttgctaggtaaacgggtagactattccggt
cgttcggttatctgtgtggggccgttcttgaaaatgtatcaatgtggattgcctaaagaa
atggcaattgagttgttcaaaccttttgttatgagagaattggttaaacgtgaattagct
tcaaatattaaaaatgctaaacgtaaaattgaacgccaagaagacgatgtgtgggatgta
ttagaagatgtcattaaagaacatcctgtactattaaaccgcgcaccgacgcttcaccgt
ttgggtattcaagcttttgaaccagttttagttgaaggacgcgctattcgtttgcatcct
ttggtttgtgaagcttataatgccgactttgacggggaccaaatggctgttcacgtaccg
ttaaatgatgaagcacaagctgaagctcgtttgatgatgttggctgctcaacatatctta
aatccaaaagatggtaagcccgttgttacgccttcacaagacatggttttagggaactat
tacctaacactagaagaagcaggacgtgaaggggaaggtatgatcttccgtgatttggat
gaagcagttgctgcttggaagaatggctatgtccacttgcattcacgtgtagctgttgat
ccaaatcgcttgggtgataaaccattaactgatttccaaaaagatcgtttgttaattaca
actgttggtaagattattttcaactcgatcatgccaccagaatttccttatttgaatgaa
ccgactgattttaatttaactgtccaaacaccagataaatattttgttgaagcggggacc
gatattcctgctcatatcaaagaacaagatttgattggaccattcaaaaaagggaactta
ggggatattattgccgaagtcttcaaacgttttaaagtaacggaaacgtcacgtatgctt
gaccgtatgaaagatttaggttataagcattctacccatgctgggatcacagttggtatt
gcagatattacagtgttacaagataaagatgacatcatttctgaagcacataaacaagtg
gcaaatgtttcaaaacaattccgtcggggattaattaccgatgatgaacgttatgaacga
gtgattgatgtttggaatgaagccaaagataaaattcaattgaaattaatgaaatctcta
ggtactcaaaatccgatctatatgatgtctgattctggtgctcgggggaatatttccaac
tttacccaacttgctgggatgcgtggtttgatggctgcaccaagtggtaagattatggaa
ttgcctatcatttccaatttccgcgaagggctgactgttttagagatgtttatttctact
cacggggctcgtaaaggaatgactgatacggccttgaagactgccgactcaggttacttg
actcgtcgtttggtcgatgtagcacaagatgttatcatccgtgatgatgattgtggaaca
gaccgtggccttgacatcgaagcgatcaaagaaggcaatgaaattattgaaccattagaa
gaacgtcttgctggtcgttataccagtaaagctgtttatcatcctgaaacaggagaagca
attgttggagcagatcacttgataagtgaagtggaagccaaacaaatcgtaaatgcagga
attgaaaaagtttcgattcgttcagcatttacttgtaactccaaacacggtgtctgccgt
cattgttacggacgcaacttagctactggtacagaagtagaagttggcgaagcagtgggt
acagttgctgcgcaatctatcggtgaacctggtactcaattaactatgcgtactttccat
actggtggggttgctggagacgatattactcaagggttgccacgtgtacaagaaattttt
gaagcccgtaatccaaaaggggaagctgttattactgaagttacaggtgaagtcactgaa
attgcagaagatgcggctactcgtgctaaagaagttacgattacaggtgaaacagataca
cgtacgtataccgttccttatacagctcgtatgaaagttgaagaaggagaacgaattcat
cgtggagctccacttacagaaggttcaatcgatccgaaacacttattgcaagtacgtgat
gtgatttctgttgaaaattatttattgcatgaagttcaacgagtttatcggatgcaaggg
gttgaaatcggcgataaacacgtcgaagtaatggttcgtcaaatgttacgtaaagttcgt
gtgatggatccaggagatacagatatcttgcctggtacaatgatggacattgcggacttt
agagaccaaaactataaaaccctagttgcaggcggtattcctgctacttctcgtccagta
ttactaggtatcacgaaagcttctctggaaacaaacagcttcttatctgctgcttccttc
caagaaacgacacgtgtactgactgatgcggcaattcgtggtaaacaagatccacttctt
ggattgaaagaaaatgttattattggtaagatcattccagctggtaccggaatgcctcgt
taccgtaacatggaaccaaaagaagtgaatactgccagcgaaaatgtttacagtatttcc
gatattgaagcacaaatggctgcagaagatgctttaaatgaaacacaaagcgaaaaataa
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