Tessaracoccus lapidicaptus: TLA_TLA_00365
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Entry
TLA_TLA_00365 CDS
T06975
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tla
Tessaracoccus lapidicaptus
Brite
KEGG Orthology (KO) [BR:
tla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tla03019
]
TLA_TLA_00365
Enzymes [BR:
tla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TLA_TLA_00365
Messenger RNA biogenesis [BR:
tla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TLA_TLA_00365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
AAA_22
HA2_C
AAA_19
HA2_N
NACHT
nSTAND3
T2SSE
AAA_30
ResIII
AAA_23
Motif
Other DBs
NCBI-ProteinID:
VEP38906
UniProt:
A0A1C0AMS0
LinkDB
All DBs
Position
1:complement(378550..382359)
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AA seq
1269 aa
AA seq
DB search
MTDAHTAPTVEVDPSLPIAVEAERIAALIRDHQVVVVAGETGSGKTTQLPKICLLAGRER
IAHTQPRRIAARTVAQRIAAECGVELGDFVGYQVRFTRKVSAETRIKVMTDGILLSELTH
DRRLSRYDTIIIDEAHERSLNIDFLLGYLRQLLPARPDLRVIVTSATIDTARFSAHFDDA
PVVEVSGRTYPVETRYRPLNEDEDEIDGIVGAVEEIVTESATGDILVFLSGEREIRDAAD
AVEKLGTGLEVLPLFARLSAADQQRVFQPHGGRRVVLATNVAETSITVPGIRYVIDTGTA
RISRYSARTKVQRLPIEPVSQASANQRAGRCGRLGPGIAIRLYSEEDFASRPLYSEPEIL
RTNLATVILLMAQAGLGDVENFPFVEAPVLSQINDGVRVLTELGALHPRKRHDHVRLTRT
GRMLARLPVDPRLGRMLVEGSRRRTLGTVLILVAGLTVPDVRERPAEFQAQADQLHRRFW
SGDDPAPEQPAPSAEPARHTVHTGTRPEAAAAAPLEGGDFEVLLNVWTYLRRRRRELSGS
AFRRMCRAEYLSFVRFREWEDLVSQLKEAVRELDLDTSGSGPMSEVLTCLLTGLLSNVGL
AEVDKSKPTPGKRRPLTMYLGARGARFAIQPGSSLARRTPPLVMAFELVETSQLWARTVA
EVRPEWIEAVGGHVLTRTVSEPRWSQRTATVIASERLTLFGVPIVAGRRTNYAADHPAEA
REIFLRSALVEGEWETRNKLVTANRGVLDEATTLTDRMRRPDLLISDEALFEFYDSRVPG
DVVSGATFDRWLRGLPPAEWPRLTLDDAVVDADALRPDDYPDHWLVGQHRLPIRYVFDPG
AGGDGVTVTVRLELLNQLDGAPFSWQVPGLRRELITELIRTLPKAQRTSFVPAPDYARRA
LDHMAERGFVGRGSLSEALASTLTALTGTVVAPGDFRPEALSSHLRPTFVVTDNGREVAR
GADLDALVERLAPRVAAKLTRSAGDLARTGQRSWTFGAVPRRITVAAGVIGYPALVDEGS
TVGLRVLDAPATADRSHVLGVRRLLTLTNPDPVKWVVGHLGRDEKLALANSPYPSVPELL
ADAWLKAGEQLAAEQGPVVEVRDEEAYARVALAVRQECPGRTRQVVATVAQALTSLTRAR
LLLGSMAEADPVRRDVTTQLDNLFFPRFISATPDPWFGHLPRYAQGAVARIEAALANPAR
DARLRAEVDETEDLYADLTAAQPAGPLSAPVEEIAFLIEELRISLFAQQLRTAVPISAKR
IRQAIRHAS
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgcgcacaccgcgccgacagtcgaggtcgatccgtccctgccgatcgcggtg
gaggcggagcgcatcgccgcgctgatccgcgaccaccaggtggtggtcgtggcgggtgag
accggatcgggaaagacgactcagctgccgaagatctgcctgctcgcaggcagggagcgc
atcgcgcacacccagccgcggcgcatcgcggcgcgcaccgtggcacagcggatcgcggcc
gaatgcggcgtcgagctcggggacttcgtgggctaccaggtcaggttcacgcggaaggtg
tcggccgagacccgcatcaaggtgatgaccgacggcatcctgctctcggaactcacccac
gaccggcgcctcagccgctacgacacgatcatcatcgacgaggcgcacgagcgcagcctc
aacatcgacttcctgctcggctacctcaggcagctgctgccggcgcgcccggacctgcgg
gtcatcgtgacgtcggcgaccatcgacaccgcgcggttctcggcgcacttcgacgacgcc
cccgtcgtggaggtgtcagggcgcacctacccggtggagacgcgctaccggccgctcaac
gaggacgaggacgagatcgacgggatcgtgggcgcggtcgaggagatcgtcacggagtcg
gccacgggagacatcctcgtgttcctcagcggggagcgggagatccgtgacgccgcggac
gccgtcgagaagctgggcaccggcctggaagtcctgccgctgttcgcccgcctgtccgcc
gccgaccagcagcgcgtgttccaaccgcacggcgggcgccgcgtggtcctcgccaccaac
gtggccgagacgtccatcaccgtcccggggatccgctacgtcatcgacacggggacggcg
cgcatctcgcgctactcagcccgcaccaaggtgcaacgcctccccatcgagccggtctcc
caggcgtcggccaatcagcgcgccgggcgatgcgggcgcctcggcccgggcatcgcgatc
cgcctgtacagcgaggaggacttcgcgtcgcgtcccctgtactcggagccggagatcctg
cgcaccaacctcgccactgtcatcctgctgatggcgcaggccggcctgggcgacgtcgag
aacttccccttcgtcgaagccccggtgctgtcgcagatcaacgacggcgtgcgcgtcctc
accgagctgggcgccctgcatccgcgcaagcgccacgaccacgtccggctgactcgcacg
gggcgcatgctggcccggctccccgtcgaccctcgcctcggcaggatgctcgtcgagggc
tcccggcggcgcaccctcggcacggtgctgatcctcgtcgccggactcaccgtgcccgac
gtccgcgagcgccccgccgagttccaggcccaggccgaccagctgcaccgccgattctgg
tccggagacgaccccgcgcccgagcagcccgctccctccgcggagccggcccgacacacg
gtgcacaccgggacccggcccgaggcggccgccgcggccccgcttgagggcggcgacttc
gaggtgctcctcaacgtgtggacctacctgcggcgtcgtcgccgcgagctgtcgggcagc
gcgttccgccgcatgtgccgcgccgagtacctcagcttcgtccgcttccgggagtgggag
gacctggtgtcgcagctgaaggaggcggtccgggaactggacctcgacacctccggatcg
gggcccatgtcggaggtcctcacctgtctgctgaccggcctgctgtcgaacgtcgggctg
gccgaggtggacaagagcaagcccacgcccgggaagaggcgtccgctgacgatgtatctc
ggcgcacgcggggcgaggttcgcgatccagcccggctcgtccctcgcccggcgcacgccg
ccgctggtgatggccttcgagctcgtggagacctcgcagctgtgggcgcggaccgtcgcg
gaggtgcgccccgagtggatcgaggccgtggggggtcacgtcctcacgcggacggtctcc
gagccgcggtggtcgcagcggaccgccacggtgatcgccagcgaacgcctcaccctcttc
ggggtgcccatcgtcgcgggccggcgcaccaactacgcggccgaccacccggccgaggcc
cgcgagatcttcctgcgctccgcgctcgtggagggggagtgggagacccgcaacaagctg
gtcaccgccaaccggggcgtcctggacgaggcgaccaccttgacggaccggatgcgtcgg
cccgacctgctcatctccgacgaggcgctgttcgagttctacgactccagggtgcccggc
gacgtcgtctcgggcgccacgttcgaccgctggctgcgcgggctcccgccagcagagtgg
ccgcggctcacgctggacgacgcggtcgtcgacgcggacgcgctgcgccccgacgactac
cccgaccactggctggtcgggcagcaccggctgccgatccgctacgtgttcgacccgggc
gcgggcggcgacggcgtgacggtcaccgtccggctggagttgctcaaccaactcgacggc
gcgccgttcagctggcaggtacccgggctacgtcgcgaactcatcaccgagctgatccgc
accctgcccaaggcccagcggaccagcttcgtccccgcaccggattacgcccgccgcgcg
ctcgaccacatggcggagcgcgggttcgtgggccgaggttccttgagcgaggctctcgcc
tcgacgctgaccgccctcaccggcaccgtcgtcgcgcccggcgacttccgccccgaggcg
ttgagcagccacctgcggccgacgttcgtcgtcaccgacaacggccgcgaggtggcgcgc
ggggcggacctcgacgccctcgtggagcgcctagcgccgcgggtggccgcgaaactgacg
cggtcggcgggcgacctcgcccgcaccggtcagcggagctggaccttcggcgccgtgccg
cggcgcatcacggtcgccgcaggcgtcatcggctacccggcgctcgtcgacgaagggtcc
acggtcgggctgcgggtcctggacgcgcccgccaccgccgaccgctcccacgtgctgggg
gtgcgccggctcctgacgctcacgaacccggacccggtcaagtgggtcgtggggcacctc
ggccgcgacgagaagctcgcgctcgccaactcgccctaccccagcgtccctgaactcctc
gcggacgcgtggctgaaggccggcgagcagctcgccgcggagcagggccccgtcgtcgag
gtccgcgacgaggaggcctacgcccgcgtcgccctggccgtgcggcaggagtgcccgggc
cgcacccgtcaggtcgtggcgaccgtcgcgcaggccctgacgtcgctgacgcgggcccgg
ctgctgctggggtcgatggccgaggcggatccggtgcgccgtgatgttacgacccagctc
gacaacctgttcttcccccgcttcatctccgccaccccggacccctggttcggccacctg
ccgcggtacgcgcagggcgccgtcgcgcggatcgaggcggccctggcgaacccggcgcgc
gacgcccggctccgggctgaggtggacgagacggaggacctgtacgcggacctgaccgcc
gcccagccggcggggccgctgtcggcgccggtggaggagatcgcgttcctcatcgaggag
ttgcgcatcagtctgttcgcgcagcagctgcgcaccgcggtccccatctcggccaagcgc
atccggcaggcgatccggcacgcctcctga
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