Tessaracoccus lapidicaptus: TLA_TLA_02425
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Entry
TLA_TLA_02425 CDS
T06975
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tla
Tessaracoccus lapidicaptus
Pathway
tla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TLA_TLA_02425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tla03021
]
TLA_TLA_02425 (rpoC)
03400 DNA repair and recombination proteins [BR:
tla03400
]
TLA_TLA_02425 (rpoC)
Enzymes [BR:
tla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TLA_TLA_02425 (rpoC)
Transcription machinery [BR:
tla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TLA_TLA_02425 (rpoC)
DNA repair and recombination proteins [BR:
tla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TLA_TLA_02425 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
GemA
TarH
Motif
Other DBs
NCBI-ProteinID:
VEP41225
LinkDB
All DBs
Position
1:2605846..2609784
Genome browser
AA seq
1312 aa
AA seq
DB search
MLDVNFYDELRIGLANADQIREWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAHMITSVDEEGRHRDLSSLQAKVEVETKQVAGRRDADIEARMRKLEED
LAQLEEEGAKADIKRKVREAAEKEAGLIRTRAQRQLDRIDEVWQRFKSLKVQDLEGDETL
YREMKKRFGKYFEGSMGAEAIQKRLQSFDLAAESDKLREIIATGKGQRKTRALKRLKVVA
AFRAGENHPSAMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLDDLNHAQNIKAAKRMVERQR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPADGRPVTMPTQDMIIGHYFLTQQRSGAGEGRV
FSSLAEAIMAFDRGDLAIGAPIRIRLTDVIVDGAEPRADGSLLVETTLGRALFNEALPDD
FGYVNTVVGKKVLGQIVNDLAERYPKVVVANALDNLKDMGFKWASRSGVTVSISDVQTPP
QKAQILEGYEARASKIDKLYERGTVTEDERRQELIAIWTDATAELTEAMKNNFTADNPIF
MMVDSGARGNMTQMRQIAAMRGLVANPKGDIIARPIKSNFREGLSVLEYFISTHGGRKGQ
ADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLTKVIAKWTKSADDETGKPAVVAA
EPFEDGARVDITPDVETSVYARSLAVDVADAQGTVLVEAGTDLGDAEIRRLVEAGITEVK
VRSVLTCESAFGTCAMCYGRSLASGKTVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVTELFEARQPKGKAPIAEADGVIRIEDGDRSRKLVLVRDDGGEDLEYPVA
RRARLEFEDHHGQRIHIEDGVRVSIGQQLTAGQVDPQDVLRVRGLRKVQEHLVEEVQRVY
RTQGAPIHDKHIEIIIRQMLRRVTVIDSGDTSMMPGELVDRASYENANRKALTEGGKPAE
GRPVLMGITKASLATESWLSAASFQETTKVLTDAAIQGKSDSLLGLKENVILGKLIPAGT
GLDRYRNIRVEPTEEARASAYTMSYDPYDYSFGSDVVGPAVPLDEMDFGELR
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtgaacttctacgacgagcttcggatcggtcttgcgaacgcggaccagatc
cgcgagtggtcgcacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgcgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgcgagcgctgtggcgtc
gaggtgacccggtccaacgtgcgccgtgagcgcatgggccacatcgagctcgccgccccc
gtgacgcacatctggtacttcaagggcgtccccagccggctcggctacctgctcgacatc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgcacatgatcacgtccgtggac
gaggagggtcgccaccgtgacctgtcctcgctgcaggccaaggtcgaggtggagaccaag
caggtcgccggccgccgcgacgccgacatcgaggcgcgcatgcgcaagctcgaggaggac
ctcgcgcagctcgaggaggagggcgcgaaggccgacatcaagcgcaaggtccgcgaggcc
gccgagaaggaggccgggctcatccggacccgggcccagcgccagctggaccgcatcgac
gaggtctggcagcggttcaagtccctcaaggtccaggacctcgagggcgacgagacgctg
taccgcgagatgaagaagcgcttcggcaagtacttcgagggctcgatgggcgccgaggcg
atccagaagcgcctgcagtccttcgatctggccgccgagtcggacaagctgcgcgagatc
atcgccaccggcaagggccagcgcaagacgcgcgccctcaagcggctcaaggtcgtcgcg
gcgttccgggcgggggagaaccacccctccgccatggtgctcgacgccgtcccggtcatc
ccgccggacctgcgccccatggtgcagctcgacggtggccggttcgcgacctcggacctc
aacgacctgtaccggcgagtcatcaaccgcaacaaccgcctcaagcggctgctggatctg
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaagccgtggactcg
ctgttcgacaacggccgccgcggccgccccgtcacggggccgggcaaccgtccgctcaag
tcgatctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgccgaaggccatggccctcgagctgttcaagccgttcgtcatgaagcgcctc
gacgacctcaaccacgcccagaacatcaaggccgccaagcgcatggtcgagcgccagcgc
ccggtcgtgtgggacgtgctggaagaggtcatcgccgagcaccccgtgctgctcaaccgt
gcacccacgctgcaccgcctcggcatccaggccttcgagccgcagctcatcgagggcaag
gccatccagatccacccgctcgtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctcccgctgtccgccgaggcgcaggccgaggcacgcatcctgatgctg
tcgacgaacaacatcctcaagccggccgacggccgtcccgtgaccatgcccacgcaggac
atgatcatcggtcactacttcctcacgcagcagcgctccggcgccggtgagggccgggtg
ttctcgtcgctggcggaggccatcatggcgttcgaccgcggtgacctggcgatcggtgcg
ccgatccggatccggctgaccgacgtgatcgtcgacggcgccgagccgcgcgccgacggg
tcgctgctggtcgagaccaccctgggccgggctctgttcaacgaggccctgcccgatgac
ttcggctacgtcaacaccgtcgtcggcaagaaggtcctgggccagatcgtcaacgacctg
gcggagcggtacccgaaggttgtcgtcgcgaacgcgctggacaacctcaaggacatgggc
ttcaagtgggcgtcgcgctccggcgtgaccgtgtccatctcggacgtccagacgccgccg
cagaaggcccagatccttgagggctacgaggcgcgcgcgtcgaagatcgacaagctctac
gagcgtggcaccgtgacggaggacgagcgccgtcaggagctcatcgccatctggaccgac
gccaccgcggagctgaccgaggccatgaagaacaacttcacggccgacaacccgatcttc
atgatggtcgactccggggcacgaggaaacatgacgcagatgcgtcagatcgccgccatg
cgtggcctcgtggccaacccgaagggcgacatcatcgcgcgccccatcaagtcgaacttc
cgcgagggcctgtcggtgctggagtacttcatctccacgcacggtggccgcaaggggcag
gccgacaccgctctgcgcaccgccgactccggctacctcacgcgtcgactcgtcgacgtg
tcgcaggacgtcatcatccgtgaggaggactgtggcaccgagcgcggcctgaccaaggtc
atcgcgaagtggacgaagtccgccgacgacgagaccggcaagccggccgtcgtggccgcc
gagccgttcgaggacggcgcccgcgtcgacatcacgcccgacgtcgagacctccgtgtac
gcgcggtcgctcgccgtggacgtggccgacgcccaaggcaccgtgctggtcgaggccggc
accgacctgggtgacgccgagatccgccgcctcgtcgaggccgggatcaccgaggtgaag
gtgcgctccgtcctgacctgtgagtcggcgttcggcacgtgcgccatgtgctacggccgc
tcgctggcctccggcaagacggtggacgtcggcgaggccgtcggcatcgtcgcggcccag
tccatcggcgagcccggcacgcagctgacgatgcgtaccttccacaccggtggtgtggcc
ggcgacgacatcacgcagggtctgccgcgtgtcaccgagctcttcgaggcgcgccagccc
aagggcaaggcgccgatcgccgaggccgacggtgtcatccgcatcgaggacggggaccgc
agccgcaagctcgtgctcgtccgcgacgacggtggcgaggacctcgaatacccggtggcg
cgtcgtgcgcgactggagttcgaggaccaccacggccagcgcatccacatcgaggacggc
gtgcgcgtcagcatcggtcagcagctgaccgccggccaggtggacccgcaggacgtcctg
cgtgtccgcggcctgcgcaaggtccaggagcacctcgtggaggaggtccagcgcgtgtac
cgcacgcagggcgcaccgatccacgacaagcacatcgagatcatcatccgccagatgctg
cgacgggtcaccgtcatcgactcgggcgacacctcgatgatgccgggcgagctcgtggac
cgcgcgtcctacgagaacgccaaccgcaaggccctcaccgagggcggcaagcctgcggag
ggccgcccggtcctcatgggcatcaccaaggcgtcgctcgcgacggagtcgtggctgtcg
gccgcctccttccaggagacgaccaaggtgctcaccgacgccgccatccagggcaagagc
gattcgctcctcggcctcaaggagaacgtcatcctcggcaagctcatcccggcgggtacc
ggtctcgaccgctaccgcaacatccgggtggagccgacggaggaggcccgcgccagcgcc
tacacgatgagctacgacccgtacgactactcgttcggatccgatgtggtcggccccgcc
gtcccgctcgacgagatggacttcggcgaactccgctaa
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