Thioclava litoralis: RPE78_02545
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Entry
RPE78_02545 CDS
T10820
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tlb Thioclava litoralis
Pathway
tlb03410
Base excision repair
tlb03430
Mismatch repair
tlb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPE78_02545 (recJ)
03430 Mismatch repair
RPE78_02545 (recJ)
03440 Homologous recombination
RPE78_02545 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlb03400
]
RPE78_02545 (recJ)
DNA repair and recombination proteins [BR:
tlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RPE78_02545 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RPE78_02545 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPE78_02545 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
WRY34192
UniProt:
A0ABZ1E366
LinkDB
All DBs
Position
545459..547213
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AA seq
584 aa
AA seq
DB search
MSAFLNVEQSLTNRHWVGPGPESDRLTEAMVQETRLPHPLARILVARGVPPMEAASFLEP
TLRDLLPDPREMLDMEKASARFLAAVKARERIAIFADYDVDGGSSAALLLVWLRQMGLDP
TLYIPDRIDEGYGPNVPAMETLARDHDLIICVDCGTLSHEPVAAAKGADVIILDHHLGGE
TLPDCVACVNPNRQDETKDLAHLCAASVVFLMLVDVNRLMRGEGLKGPDLIAMLDLVALA
TVADVAPLIGCNRALVRQGLKVMGRRDRVGLRALADVSRMDQAPNAYHLGFLLGPRLNAG
GRIGAADLGARLLSTTDEAEAQALADRLDQLNTDRRDIENRVREAALKQAEDRGLDAPLV
WAAGEGWHPGVVGIVAARLKEATNRPAVVIGLDKGIGKGSARSINGVDLGASIQRVAAEG
LLLKGGGHKMAAGLTVEEGKLEAAMERLAELLAKQGAGAGGPRDLRIDTLLMPGAATTDL
IEQIEQAGPFGQGAPAPRFAFPAMEITGARQVGESHLRFSFGDGLGQKRDAIAFGAFDSA
IGPALAKPGATRFHLAGRLEINTWGGRSKVQLRLEDAAPAIETL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcctttctgaatgtcgaacaatccctgaccaatcgccattgggtgggccccggc
cccgaatccgatcggctgaccgaagccatggtgcaggaaacccgcctgccccatcccctt
gcccgtattcttgtcgcccgtggcgtgccgccgatggaggccgcaagcttccttgagccc
accctgcgcgacctgctgcccgatccgcgcgagatgctggatatggagaaagcctcggcc
cgctttctggccgcggtgaaggcccgcgagcgcatcgccatctttgccgattacgacgtg
gatggcggctcttctgccgccctgctgctggtctggctacggcagatggggctggacccg
acgctgtatatccccgaccggatcgacgagggctatggcccgaacgtacccgcgatggaa
acccttgcgcgcgatcatgacctgatcatctgcgtcgattgcggtacgctttcgcatgag
ccggtcgcagccgccaagggcgcggatgtgattatccttgaccaccacttgggcggtgag
accctgcccgattgcgtggcctgcgtgaaccccaaccggcaggacgagaccaaggatctg
gcacatctctgtgcggcctcggtggtgttcctgatgctggtcgatgtgaaccggctgatg
cgcggcgagggcctgaagggccccgatctgatcgccatgctggatctggtggcgctggcc
acggtggccgatgtggcgccgctgatcggctgcaaccgcgccttggtgcggcaggggctg
aaggtgatggggcggcgcgaccgcgtggggctgcgcgccttggcggatgtctcgcgtatg
gatcaggcgcccaatgcctatcacttgggtttcctgctggggccacggctgaatgcgggg
ggccggatcggtgccgccgatctgggcgcgcgtcttctatcgaccaccgacgaggccgag
gcgcaggcgctggccgaccggcttgaccagctcaacaccgaccgccgcgacatcgagaac
cgcgtccgcgaggccgcattgaaacaggcggaagaccgcgggctggatgcgcctctggtc
tgggccgcaggcgagggctggcatccgggcgtggtgggcattgtcgccgcccgcctgaaa
gaggccaccaaccgccccgccgtggtgatcgggctggataagggcatcggcaagggctcg
gcgcgctcgatcaacggggtggaccttggtgcctctatccagcgtgtggccgccgagggg
ctgttgctgaaaggcggcgggcataaaatggccgcaggtctgacggtcgaggaaggcaag
ctggaggccgcgatggagcgtctggcagagctgttggccaagcagggcgcgggggccggt
gggccgcgtgatctgcgcatcgacacgctgctgatgcccggcgcggccacaaccgacctg
atcgagcagatcgaacaggccggccccttcggtcagggcgcccctgccccgcgttttgcc
ttccccgcgatggaaattaccggcgcgcgtcaggttggcgaatcgcatctgcgattctct
ttcggggatggtctgggccagaaacgcgatgccatagccttcggggcctttgatagcgcc
atcggtccggcccttgccaagccgggggcgacacgattccatctggccggccgactggaa
atcaacacctggggcggcagaagcaaggttcaactgcggctggaggacgccgcacccgct
attgaaaccctttga
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