Thioclava litoralis: RPE78_03235
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Entry
RPE78_03235 CDS
T10820
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tlb Thioclava litoralis
Pathway
tlb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tlb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPE78_03235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlb03021
]
RPE78_03235
03400 DNA repair and recombination proteins [BR:
tlb03400
]
RPE78_03235
Enzymes [BR:
tlb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPE78_03235
Transcription machinery [BR:
tlb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPE78_03235
DNA repair and recombination proteins [BR:
tlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPE78_03235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
WRY34313
LinkDB
All DBs
Position
complement(677634..678650)
Genome browser
AA seq
338 aa
AA seq
DB search
MIHKNWAELIKPTQLEVKPGNDPERQASLVAEPLERGFGLTLGNALRRVLLSSLQGAAIT
SVQIDNVLHEFSSVAGVREDVTDIVLNLKGVSLRMDVEGPKRVSISAKGPGVVTAGDISE
TAGIEVLNKEHVICHLDDGADLFMELTVNTGKGYVAADKNRPEDAPIGLIPIDAIYSPVK
KVAYEVTPTREGQVLDYDKLTMKIETDGSITPEDAVAFAARILQDQLSIFVNFEEPESAS
KQDAEDGLEFNPLLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKS
LNEIKEVLSGMGLHLGMEVEDWPPENIEDLAKRFEDQF
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgatccacaagaattgggccgagctgatcaagccgacgcagctggaagtaaaaccgggt
aacgatccggagcgtcaggcttcgctcgttgcagaaccgcttgagcgtggttttggtctc
accctggggaacgcgctgcgccgcgttctgctgtcctcgctgcaaggcgcggccatcacc
agcgtacaaatcgacaatgtgctccacgagttctccagcgtggccggtgtgcgtgaagac
gtcaccgacatcgtgctgaacctcaagggcgtgtcgctgcgtatggatgtcgaaggcccc
aaacgcgtgtcgatctcggccaaaggtccgggcgttgtgaccgctggcgacatctccgag
accgcaggcatcgaagttctgaacaaagagcatgtcatctgccaccttgatgatggtgcc
gacctgttcatggagctgaccgtcaataccggcaaaggctatgtcgctgccgataagaac
cgtccggaagacgcgcccatcggtctgatcccgatcgacgcgatctattcgccggtgaaa
aaggtcgcctacgaagtcaccccgacccgtgaaggtcaggtgctggactatgacaagctg
accatgaagatcgaaaccgatggctcgatcacgccggaagacgccgtggcatttgctgcg
cgcatcctgcaagaccagctgtcgatcttcgtcaacttcgaagagcccgaatcggcctcg
aagcaggacgcggaagacggcctcgagttcaacccgctccttctcaagaaggtcgacgag
ctggaactctcggtccgttcggcaaactgcctcaagaacgacaatatcgtctatatcggc
gacctcatccagaaaaccgaagccgagatgctccgcaccccgaacttcggccgcaagtcg
ctgaacgagatcaaggaagtgctttcgggcatggggctgcatctcgggatggaagtcgaa
gactggccgccggaaaatatcgaagatctggccaagcgtttcgaagatcagttctga
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