| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
tlb Thioclava litoralis
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:tlb00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPE78_03425 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:tlb03021]
RPE78_03425 (rpoC)
03400 DNA repair and recombination proteins [BR:tlb03400]
RPE78_03425 (rpoC)
Enzymes [BR:tlb01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPE78_03425 (rpoC)
Transcription machinery [BR:tlb03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPE78_03425 (rpoC)
DNA repair and recombination proteins [BR:tlb03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPE78_03425 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(702619..706851)
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| AA seq |
1410 aa
MNQEITTNPFNPLAQPKQFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLMYGQLMTEDEYLDAQDQYGADAFT
ANIGAEAIREMLAGIDLEATAETLREELKEATGELKPKKIIKRLKIVENFLESGNRPEWM
VLTVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGTNRRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVFLNRAPTLHRLGFQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLTMERKGMKGEGMVFGSIEEMEHAL
NAGELHLHAKIHARVKQIDETGNEVFIRFETTPGRLRLGSLLPLNAKAPFDLVNRLLRKK
DVQNVIDTVYRYCGQKESVIFCDQIMSMGFKEAFKAGISFGKDDMVIPDTKWTIVNDVRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDQVTEAMMSTISAAKYDENGAEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRAHDCGTDKGITASAAINDGEVVAPLSERVLGRV
AADDVLVPGSDEVLVRRNELIDERKADQIEAAGVQSIRIRSALTCEAEEGVCALCYGRDL
ARGTMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGSQSFLEASQEGKIEFRNPS
LLENANGEQIIMGRNMQIVIVNDHGEELASHKVGYGTHVFVKEGDVVKRGTKLFEWDPYT
LPIIAEKAGKAKLVDLIAGLSLREDTDEATGMTQKIVSDWRSSSRAKDLKPEIFIVDQDG
EPVRNDAGHPVIYPMSVDAILSVDEGQDIRAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRIAIEPREEGLDAVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILRIMGIEALAGYLINEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
VLDSGDTTLLKGEHVDKVEFDEVNAKAEARGVRPAHGEPVLLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATSQVRRVASERDSVVIEAKRA
EAEQAVALAAPSNTDSGADFGVVETPESRD |
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| NT seq |
4233 nt +upstreamnt +downstreamnt
atgaaccaggaaatcacgaccaatccgttcaacccgctggcacagcccaagcagtttgac
gagatcaaggtgtcgctggcatcgccggaacggatcctctcgtggtcctacggcgagatc
aaaaagccggaaaccatcaactaccgcacgttcaaacccgagcgtgacggtctgttctgc
gcccgtatctttggcccgatcaaagactacgaatgcctttgcggcaaatataagcgcatg
aaatatcgcggcgttgtctgcgagaaatgcggtgtggaagtcacactgcaaaaggtccgt
cgcgagcgtatgggccatatcgaactggccgcgccctgcgcccatatctggttcctcaag
tcgctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgacctcgagcgtatt
ctctacttcgaaaactatgtcgtcatcgagccgggtctgaccgacctgatgtatggccag
ttgatgaccgaagacgaatatctcgacgcgcaggaccagtatggcgcagatgctttcacc
gccaatatcggtgctgaagcgatccgcgagatgctggcagggatcgatctggaagcgacc
gcagaaaccctgcgcgaagagctgaaagaagcgaccggcgagctgaagccgaagaagatc
atcaagcgtctgaagatcgtcgagaatttcctcgagtcgggcaaccgtcccgagtggatg
gtgctgaccgttcttccggtgatcccgccggaactgcgtccgcttgtgccgttggatggt
ggccgcttcgcgacctcggatctgaacgatctctaccgtcgtgtgatcaaccggaacaac
cgtctgaagcgcctgatcgaactgcgtgcgcccgatatcatcgtgcgtaacgaaaagcgt
atgctgcaggaatcggtcgatgcgctgttcgacaacggccgtcgtggccgcgtgatcacg
ggcaccaaccgtcgcccgctgaaatcgctgtcggatatgctcaaaggtaagcagggccgc
ttccgtcagaacttgctcggtaagcgcgtcgacttctcgggtcgttcggttattgtgacc
ggtccggaactcaagctgcaccagtgtggtctgccgaagaagatggctttggaactcttc
aagcccttcatctattcgcgcctcgaggccaagggcctgtcgagcaccgtgaaacaggcg
aagaagcttgtcgaaaaagagcgtccggaagtttgggatatcctcgacgaggtcatccgc
gaacaccccgtcttcctgaaccgcgcaccgacgctgcaccgtcttggcttccaggcgttc
gaaccgacgctgatcgaaggcaaggccatccagctgcacccgctcgtctgctcggcgttc
aacgcggacttcgacggtgaccagatggctgtgcacgtcccgctgagccttgaagcccag
ctggaagcgcgcgtcctgatgatgtcgacgaacaacgttctgtcgcccgcaaacggcgcg
ccgatcatcgttccgtcgcaggatatgatccttggtctttactacctgaccatggagcgc
aaaggcatgaagggcgaaggcatggtcttcggctcgatcgaagagatggagcacgcgctg
aacgcgggtgagctgcatctgcatgccaagatccacgcccgcgtgaagcagatcgacgag
accggcaacgaagtgttcatccgcttcgagaccactccgggccgtctgcgccttgggtcg
ctcttgccgctgaacgcgaaagcacccttcgatctggtgaaccgtcttctgcggaagaaa
gacgtgcagaatgtcatcgacaccgtctaccgttattgcggccagaaagagtcggtgatc
ttctgtgaccagatcatgtcgatgggcttcaaggaagcgttcaaggcagggatctcgttc
ggtaaggacgatatggtgattccggataccaagtggaccatcgtcaatgatgtccgcgat
caggtgaaggatttcgaacagcagtatatggacggcctgatcactcagggcgagaagtat
aacaaggttgtcgatgcatggtcgaaatgtaacgatcaggtcaccgaagccatgatgtcg
accatttcggctgcgaaatatgacgagaacggtgccgagatggaaccgaactcggtctat
atgatggcccactccggtgcacggggctcggtcacgcagatgaagcagctgggcggtatg
cgcggtcttatggccaagccgaacggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacccacggtgcccgtaagggtctg
tcggatacggcactgaagacggcaaactcgggttacctgacccgtcgtctggtggacgtg
gcgcaggactgcatcgtgcgtgcgcatgattgcggcaccgataaggggatcacggcttcg
gcagcgatcaacgatggtgaagtggttgcgccgctgtccgagcgtgttctgggccgtgtg
gctgcagatgacgttctggttccgggctcggacgaggtgctggtgcgccgcaacgaactg
atcgacgagcgtaaagccgatcagatcgaggcggccggcgtgcagtcgatccgtatccgt
tcggcgctgacctgtgaggcggaagagggcgtttgcgcactctgctatggtcgtgacctt
gcgcgcgggaccatggtcaaccagggcgaggccgtcggtatcatcgcggcacagtccatc
ggtgaacccgggacccagctgacgatgcggaccttccacatcggcggtgtggctcagggt
ggctcgcaatccttcctcgaggcaagccaagagggtaagatcgagttccgcaatccgtcg
ctcttggaaaacgccaatggtgagcagatcatcatgggccggaacatgcagatcgtgatc
gtcaatgaccacggcgaggaactggcaagccacaaggtcggctatggtacccatgtcttt
gtgaaagaaggcgatgtggtcaagcgcggcaccaagctgttcgaatgggacccctatacc
ctgccgatcatcgccgagaaggccggtaaagcgaagctcgtggacctcatcgcgggtctg
tcgctgcgcgaggacacggacgaagcaaccggtatgacgcagaagatcgtgtccgactgg
cgttcgtcgtcgcgtgcaaaagacctcaagccggagatcttcatcgttgatcaggatggc
gagccggtccgcaatgatgcgggtcacccggtgatctatccgatgtcggtcgatgcgatc
ctttcggttgacgaggggcaggacatccgtgccggtgacgtggtcgcccgtatcccgcgc
gaaggcgcgaagacgaaggacattaccggtggtctgccgcgtgtggccgaactcttcgaa
gcccgtcgtccgaaggatcacgcgatcatcgccgagatcgatggctatgtgcgctttggg
aaagactacaagaacaagcgccgcatcgcgatcgaaccgcgtgaagaaggtctggatgcc
gtcgaatacatggtgccgaaaggcaagcacatcccggtgcaggaaggcgacttcgtgcag
aagggtgactacatcatggacggtaacccggcaccgcatgacattctgcgcatcatgggg
atcgaggctctggccggatacctcatcaacgaagtgcaggacgtctatcgtctgcaaggt
gtgaagatcaacgataagcatatcgaagtgatcgtgcgccagatgctgcagaagatcgag
gtgctggattccggcgacaccacgcttctcaagggcgagcatgtcgacaaggtcgagttc
gacgaggtcaatgccaaggcagaggcccgtggggttcgtccggcgcatggcgagccggtt
ctgctggggattaccaaagcctcgctgcagacccgttcgttcatctcggcggcgtccttc
caggaaaccacccgcgttctcaccgaggcatccgtccaaggtaagcgcgacaagctggtt
ggcctgaaagaaaacgtcatcgtgggtcgtctgatcccggcagggacgggcggggccacc
agccaggtccgtcgtgtggcaagcgagcgcgacagtgtcgtgatcgaggccaagcgcgcc
gaggcagagcaggcggttgcgcttgctgcaccgtcgaacaccgatagcggtgccgatttc
ggtgttgtcgaaacgccggaaagccgcgactga |
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