KEGG   Thioclava litoralis: RPE78_04105
Entry
RPE78_04105       CDS       T10820                                 
Name
(GenBank) primosomal protein N'
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
tlb  Thioclava litoralis
Pathway
tlb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tlb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    RPE78_04105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tlb03400]
    RPE78_04105
Enzymes [BR:tlb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RPE78_04105
DNA repair and recombination proteins [BR:tlb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     RPE78_04105
SSDB
Motif
Pfam: PriA_C DEAD PriA_3primeBD ResIII Helicase_C Zn_ribbon_PriA AAA_22 AAA_30 SPDY Imm49 HTH_IclR zf-UDP
Other DBs
NCBI-ProteinID: WRY34482
LinkDB
Position
845112..847301
AA seq 729 aa
MSGQDWFTDGARVSVLTAEPVGRPLDYLAPEGGCWAGAFVMVPLGPRKVLGVVWGAGDGD
FAAAKLRRVLQVMDVPPMKAEMRQFLMRMAAYTMTPLPQVLRLATRAPGLFDAPGLRKIY
RLGSGEPSRMTDARARVLEVLRDHGGAGFQLGELAALAGVTTSVVKGMLTSGAVVEADVP
RDAPFARLDPSLPGKVLSEAQRAAVARLEDGSGGFAPVLLKGVTGSGKTEVYLEAVADCL
RQGRQALVLLPEIALSSEFLARVEARFGAKPGEWHSGVTQTERRRLWKATASGEVQMVAG
ARSALFLPFRDLGLIVVDEEHDTSYKQEEGVLYNARDMAVLRASLCGAQVVLASATPSLE
TWANAESGKYARVDLGARFGASKLPEMRPIDMRNESIESQHWIGPTLVGAVIERVRRGEQ
AMLFLNRRGYAPVTICRACGHQIGCDHCDARMVEHRFMKQLVCHQCGETKPIPTQCPNCK
VEGKLAPVGPGVERLAEEVRERFPDSRMAVLSSDLFTTARALKEAISDIANGGADIIIGT
QIVAKGHNFPKLSLVGVIDADLGLQGSDLRAAERTFQLMRQVAGRAGRAETEGLALLQTY
QPEHPVIRAILGGDEEAFWRAEAAQRQAQHVPPYGRMAGIILSGPDLKPLFDIGEALSRQ
SGPLREIEATVYGPAPAPVARVRGRHRVRLLVKADKRAPLQAALARWVAQVRLPNNVRLA
IDIDPQSFM
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgagcgggcaggactggtttacggacggggcgcgggtctcggttctgacggcggagccg
gtcgggcggccactggattatctggcgcctgaagggggctgctgggcgggcgcctttgtc
atggtgcctttggggccgcgcaaggtcttgggcgttgtctggggggcgggcgatggggat
tttgccgcggccaagttgcggcgcgttttacaggtgatggatgtgccgccgatgaaggca
gagatgcggcagttcctgatgaggatggccgcctatacgatgacgcccctgccgcaggtt
ttgcggctggccacccgtgcgccggggctgtttgacgcgccggggctgcgcaagatctac
cgtcttgggtcgggcgagccgtcgcggatgaccgatgcgcgggcgcgggtgttggaggtt
ttgcgcgaccatggcggggcgggctttcagttgggagaactggccgctttggcgggggtg
acgacatccgtggtgaaagggatgctgacctctggcgcggtggtggaggctgatgtgccg
cgcgatgcgccctttgcgcggcttgatccgtccttgccgggcaaggtgctatccgaggcg
caaagggccgctgtggcacggctggaggatgggtctggtgggtttgcgccggttttgctg
aagggtgtgacgggctcgggcaagacggaagtgtatctggaagcggtggccgattgtctg
cggcaggggcggcaggctttggtgcttttgcccgagattgccttgtcatcggagtttctc
gcccgtgtggaggcgcggtttggcgcaaaaccgggcgagtggcattccggcgtgacccag
accgagcggcggcggttgtggaaagccacggcctcgggcgaggtgcagatggtggcgggg
gcgcgttcggcgctatttctgcccttccgtgacttggggctgatcgtggtggatgaggag
catgacacctcctacaagcaggaggagggtgtgttgtataacgcccgcgatatggcggta
ttgcgggcatccctgtgtggggcgcaggtggttctggcctcggccacgccatcgcttgag
acctgggccaatgccgagagcggcaaatatgcgcgggtcgatctgggcgcgcggtttggc
gcctccaagctgcccgagatgcggcccatcgacatgcgcaacgagagcatcgagagccag
cactggatcggcccgacgttggtgggcgcggtgatcgagcgggtgcgccgtggcgagcag
gcgatgctgtttctcaaccgtcgcggctatgcgccggtgacgatctgtcgggcctgtggg
catcagatcggctgtgaccattgcgatgcgcggatggtggagcaccgcttcatgaagcag
cttgtctgccatcaatgcggcgagacgaaaccgatccccacgcaatgtcctaattgcaag
gtcgaaggcaagctggcacccgttggccccggtgtcgagcgtctggccgaggaggtgcgc
gagcggtttcccgacagccggatggcagtgctgtcgtctgatctgtttaccaccgcgcgg
gcgctgaaggaggcgatctctgacattgccaatggcggggcggatatcatcatcggcacg
cagatcgtggccaaggggcataacttcccgaaactgtcgctggtgggggtgatcgatgcc
gatctggggttgcaggggtccgacctgcgcgccgccgagcgtactttccagctgatgcgg
caggtggcgggccgtgcgggccgcgccgagaccgaggggctggcgcttttgcagacctat
cagcccgagcatccggtgatccgcgcgattctgggcggcgatgaggaagccttctggcgc
gccgaggccgcccagcgtcaggcgcagcacgtgccgccctatgggcgtatggcggggatt
atcctgtcggggccggatctgaagccgctgtttgacattggcgaggcgctttcgcgccag
tcgggacctttgcgcgagatcgaggccaccgtctatggccctgcccccgcccctgtggca
cgcgtgcgcgggcggcaccgcgtgcggctgctggtgaaggccgacaagcgggcacctttg
caagcggcccttgcgcgttgggtggcacaggtgcgcctgcccaataatgtgcgccttgcg
atcgacatcgacccgcaaagcttcatgtag

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