Thioclava litoralis: RPE78_08475
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Entry
RPE78_08475 CDS
T10820
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tlb Thioclava litoralis
Pathway
tlb03030
DNA replication
tlb03430
Mismatch repair
tlb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPE78_08475 (dnaE)
03430 Mismatch repair
RPE78_08475 (dnaE)
03440 Homologous recombination
RPE78_08475 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlb03032
]
RPE78_08475 (dnaE)
03400 DNA repair and recombination proteins [BR:
tlb03400
]
RPE78_08475 (dnaE)
Enzymes [BR:
tlb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RPE78_08475 (dnaE)
DNA replication proteins [BR:
tlb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RPE78_08475 (dnaE)
DNA repair and recombination proteins [BR:
tlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RPE78_08475 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
TPR_14
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WRY32749
UniProt:
A0ABZ1DVH2
LinkDB
All DBs
Position
1731979..1735491
Genome browser
AA seq
1170 aa
AA seq
DB search
MTEPRFIHLRVHTEYSLLEGAVPVKKLIKMCDAANMPAVAVTDTNAMFSALEFSVNSKGA
GLQPILGCQVSVAYDPARPGEKIRLPAPVVLLAQNETGYENLMELSTCLYVGKNGDLVQV
TTEQLAAHSEGIICLSGGAQGPVGKFLQNGQPDRARALMERLAAIYPDRLYVELQRHPGE
DGRNTEAERLTERGFVEMAYEMGLPLVATNDVYFPKAEMYEAHDALICIAEGAYVDQIEP
RRRLTPQHYFKSEAEMVALFSDLPEALENTVEIARRCAYGASKIDPILPKFADDEVEELR
RQAWEGLRNRLEVIEAAAPVEDYEARLKFELGIIEQMGFPGYFLIVADFIKWAKAHDIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIKYV
QQKYGREKVGQIITFGALLSKAAVRDVGRVLQMSFGQVDRLSKMIPVEGVKPVSIEKALA
DEPRLREAAKNEEVVARLLKYAQQVEGLLRNASTHAAGVVIGDRPLDHLVPLYQDPRSDM
PATQFNMKWVESAGLVKFDFLGLKTLTVVQSAMNLIFKSGRPLHVDAHGNQLYEPAAGGE
NQINLIPLDDQKTYDLYSSAHTVAVFQVESEGMKSALRQMKPTCIEDIVALVALYRPGPM
ENIPTYCDVKHGRKPLESVHKTIDHILAETQGIIVYQEQVMQIAQEMAGYTLGGADLLRR
AMGKKIKEAMDAERPKFESGAAKNGVDKKKASEVFDLLEKFANYGFNKSHAAAYAVVSYY
TAWLKANHPVEFMGGVMNCDIHLTEKLAIYAQEVKKGLGAEIVPPCVNRSLATFDVVDQK
LVYALGALKNVGVEAMEMIVRARQVDGKDKPFRDLFDFARRVDLKRVGKRPLEMLARAGA
FDQLDPNRKRVFQSLDSLVAWSGAVIEAKNSAQVSLFGDAGDDLPPPRMADTDDWLPGEK
LSEEHKAIGFYLSGHPLEDYMPALKRKKVMTLDEIHAKALNGPFAAKIAGEVASVREKKS
AKGNRFAFVALSDASGPYEVAFWSEALEASRAVLETGRLLVLNVKVEVDGESVRMVAGSA
SPVDAMVADAGGTGLMIHVETPEAVPSIASLLGRLEEEGKVRSRGPISFTVFDAEKNCRY
ELATGRDFPVNPQIKGAIRSLRGVSMVEEI
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcctcgattcattcacctgcgcgtccataccgaatattcgctgcttgagggg
gctgtgcccgtcaagaagctgatcaagatgtgtgacgcggccaatatgcccgccgttgcc
gtcaccgacaccaatgcgatgttttccgctttagagttttcggtcaattcgaagggggcg
ggattgcagcctattctgggctgtcaggtgtctgtggcctatgatccggcgcgaccgggt
gaaaagatccggctgccggcgccagtggtgcttctggcccagaacgagacgggttacgag
aacctgatggagctgtcgacctgcctctatgtgggcaagaatggcgatctggtgcaggtc
accaccgagcagcttgcggcgcattccgaggggatcatctgtctgagcggcggggcgcag
gggcctgtgggcaagttcttgcagaatggccagccggatcgggcgcgggcgctgatggag
cgtctggccgcgatttatcccgaccgtctctatgtcgaattgcagcgtcatccgggcgag
gatgggcgcaataccgaagccgaacgtctgaccgagcgcggctttgtcgaaatggcctat
gagatgggtctgccgctggtggccaccaatgatgtctattttcccaaggccgagatgtat
gaggcgcatgatgcgctgatctgcattgcggagggggcctatgtcgaccagatcgagccg
cgccgccgtttgacgccccagcattatttcaaatccgaagccgagatggtggcgctgttt
tccgatctgccggaggctttggagaataccgtcgagatcgcgcggcgctgtgcttatggg
gcctcgaagattgacccgatcctgcccaaattcgccgatgacgaggtcgaggaattgcgc
cgtcaggcgtgggagggcctgcgcaaccggcttgaggtgatcgaggcggcggcgcctgtc
gaggactatgaggcgcggctgaaattcgagcttgggatcatcgaacagatgggatttccg
ggctacttcctgattgtggccgactttatcaaatgggcgaaggcgcatgatattccggtg
gggccggggcgggggtcgggggcaggttcgcttgtggcctatgcgctgaccatcaccgac
cttgatcccttgcgctattcgctgctgttcgaacgcttcctgaaccccgagcgggtctcg
atgccggacttcgatatcgacttctgcatggatcgccgcgaagaggtgatcaaatatgtg
cagcagaaatacgggcgcgagaaggtgggccagatcatcaccttcggtgcgcttctgtcc
aaggccgccgtgcgcgatgtggggcgggtgttgcagatgtccttcgggcaggtggaccgg
ctttccaagatgatccccgtcgagggggtgaagcccgtgtcgatcgagaaggcgctggcc
gatgagccgcgtctgcgcgaggcggcaaagaacgaagaggtcgtggcacggctgttgaaa
tatgcccagcaggtggaaggattgctgcgcaatgcctcgactcacgcggcaggggtggtg
attggcgaccgtccgctggaccatctggtgccgctctatcaggatccgcgatccgacatg
ccggcgacccagttcaatatgaaatgggttgaaagcgcgggtctggtgaaattcgacttt
ctgggtctgaagacactgaccgtcgtgcaatcggcgatgaacctgatcttcaaatccggc
aggccgctccatgtggatgcgcatggtaaccagctttatgaaccggcggcggggggcgag
aaccagatcaaccttatcccgctggatgatcagaagacctatgatctttactccagcgcg
catacggttgcggtgtttcaggtggaatccgaggggatgaaatcggcgctgcgccagatg
aagcccacctgtatcgaggatatcgtggcgctggtggctttgtatcgcccgggtccgatg
gagaatatcccgacctattgcgatgtgaaacacgggcgcaagcctctggaatccgtgcat
aagaccatcgaccatattctggccgagacccaaggcatcatcgtttatcaggaacaggtg
atgcagatcgcgcaggagatggcgggctatacgctgggcggggccgaccttctgcgccgc
gcgatgggtaagaagatcaaggaggcgatggatgccgagcgccccaaatttgaatcgggg
gcggcgaagaacggggtcgataagaagaaagcctcggaggtgttcgaccttctggagaaa
ttcgccaattacggcttcaacaaatcccacgccgccgcctatgcggtggtcagctattac
accgcttggctgaaggccaaccatcctgtcgagttcatgggcggggtgatgaattgcgat
atccatctgaccgagaagcttgcgatctatgcgcaggaggtcaagaagggcttgggcgcc
gagatcgtgccgccctgtgtgaaccgctctttggcgacctttgatgtggtggaccagaag
ctggtctatgctttgggcgcgctgaagaatgtgggtgtcgaggcgatggagatgatcgtc
agggcgcgtcaggtggacgggaaggataagcccttccgtgatctctttgatttcgcccgc
cgtgtcgatctgaagcgggtcggtaagcggcccttggagatgctggcgcgggcgggggcc
tttgaccagctggacccgaaccgcaagcgggtgttccagtcgcttgacagtctggtggca
tggtcgggggctgtgatcgaggcgaagaattcggcgcaggtgtccttgtttggcgatgcg
ggcgatgatctgccgccgccgcgcatggccgataccgatgactggttgccgggcgagaaa
ctgtccgaggagcataaggccatcggcttctatctctcgggccatccgctggaagattat
atgcccgcgctcaagcgcaagaaggtgatgacgctggacgagatccacgccaaggcgctt
aacggcccctttgcggcgaagatcgcgggcgaggtggcctccgtgcgcgagaagaaatcg
gccaagggcaaccgctttgcctttgtcgcgctgtcggatgcctcggggccctatgaggtg
gccttctggtccgaggcgctggaggcgtcgcgcgcggttctggaaacggggcggcttctg
gtgctgaacgtcaaggtcgaggtggatggcgagtcggtgcgtatggttgccggttcggcc
agccctgtagatgcgatggttgccgatgccggtggtacggggctgatgattcacgtggaa
acaccggaggccgtgccgtcgattgcgtcgctcttggggcggctggaggaagagggcaag
gtgcgctcgcgcgggccgatcagtttcacggtgttcgatgccgagaagaactgtcgctat
gaattggcgacggggcgcgattttccggtgaacccgcagatcaaaggggcgatccggtcc
ttgcgtggggtgtcgatggtggaagaaatctga
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