Thioclava litoralis: RPE78_10735
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Entry
RPE78_10735 CDS
T10820
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tlb Thioclava litoralis
Pathway
tlb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPE78_10735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlb03019
]
RPE78_10735
03009 Ribosome biogenesis [BR:
tlb03009
]
RPE78_10735
Enzymes [BR:
tlb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RPE78_10735
Messenger RNA biogenesis [BR:
tlb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RPE78_10735
Ribosome biogenesis [BR:
tlb03009
]
Prokaryotic type
rRNA processing factors
RPE78_10735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WRY33165
UniProt:
A0ABZ1DZ52
LinkDB
All DBs
Position
complement(2168497..2171229)
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AA seq
910 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETINKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPTADREALLAEERALAQSDEDEEEKPARTRRRRRSSRSD
AAETQPAQAEATAADETLRSEDIPGMGVADPSEDNLHIEDHDTPQSDDAPHDAADEQEDD
HGSESDHDDDDIESVAEEDVSEEIRRPRKPRARRFKIQEVIKVRQIMLVQVVKEERGNKG
AALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKDIASELSVPQGAGLIIRTAG
SQRTKTEIRRDYEYLIRMWQQIRELTMKSVAPAPIYEEGDLIKRSIRDLYSKDIDEVLVE
GERGYRAAKDFMRMIMPSHAKNVQHYAEALPLFARYQVEGYLASMFNPVVQLKSGGYLVI
GVTEALVAIDVNSGRATKEGSIEETALKTNLEAADEVARQVRLRDLAGLIVIDFIDMDER
KNNTAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIESTTQPCPHCHGTGLI
RSDDSMALQVLRAIEEEATRKRAREVLVRVPVAVANFLINQKREHIALIESRYGLSVRIE
ADPTLVSPDYVIEKFKTATRVVPEAVSNVVHASAEFMSELEELDAALDAEIVEEDEDEAP
EAATETSTDEGPKKKKRRRRRRRKSGADQLNDEAETESDEEDSAPAAEAEPDVAAEDAEG
EATAPEVAEEAPKPKRSRSRSRRKPKAEAEAEAEAEAETNAEAGDNAADTTAEAETAPET
TAEAEDAPKPKRSRSRARRSKKDETLAVEAEVEAVAAPASGTVADTAPAAEAVASVPEAD
AGLAEIASPAAPVAEAPAAEAPVAEAAVGEVITAQAPVAERAKESTAEPEAAQAEADNAP
KRRGWWNVGN
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacacacgcggaagaaacccgcgtggtggttgtg
gacgggaataaagtcgaagagttcgattttgagacgataaacaagcgccagcttgccgga
aatatctatctggcaaaagtgacgcgggtcgagccttcgctacaggccgcctttgtggat
tacggtggaaaccgtcacgggttcttggctttcgccgagatccaccctgattattaccag
atccccacggcagatcgcgaagcgcttctggcagaagagcgcgcccttgcgcaatccgac
gaggacgaagaagaaaaaccggcgcgcacgcgtcgtcgtcgccgttcgtcgcgcagcgat
gctgcggaaacgcagcctgcacaggccgaggcgaccgcagcagacgagaccctgcgttcg
gaagatattcccggcatgggcgtggccgatccgtcagaggacaacctccatatcgaggat
cacgacaccccccaatccgacgacgccccccatgatgcggccgacgagcaggaagacgac
cacggctcggaaagcgatcatgacgatgacgacatcgaatccgtcgccgaagaggatgtg
agcgaagagatccgccgcccgcgcaagccccgcgcgcgccgcttcaagatccaagaggtc
atcaaggtccgccagatcatgctggtgcaggtggtgaaggaagagcgcggcaacaagggg
gcggcactgaccacctatctgtcgcttgctggccgctactgcgtgctgatgcccaatacc
gcccgcggtggtggcatctcgcgcaagatcaccaatgccgccgaccgtaagaagctgaag
gatatcgcctcggaactctccgttccgcagggcgcgggtctgatcatccgcacggcaggc
tcgcaacgcaccaagaccgagatccgccgcgattacgaatatcttatccgtatgtggcag
cagatccgcgaactcacgatgaagtcggtcgcccccgccccgatctatgaggaaggcgat
ctgatcaagcgctcgatccgcgacctttactcgaaggatatcgacgaggtgctggttgaa
ggcgagcgcggctatcgtgcggccaaagacttcatgcggatgatcatgccgtcccatgca
aagaacgtgcagcattatgccgaggcgctgccgcttttcgcgcgctatcaggtcgagggc
tatctggcctcgatgttcaaccccgtggtgcagctgaaatccggaggctatctggtgatc
ggcgtgaccgaggcactggtggcaatcgacgtgaactcgggccgtgcgaccaaagagggc
tccatcgaggagaccgcgctgaaaaccaacctcgaggccgccgacgaggtggcccgtcag
gtacgcctgcgcgaccttgctggcctcatcgtcatcgacttcatcgatatggacgagcgc
aagaacaacaccgccgttgagaaacggatgaaggacaagctcaagaccgaccgcgcccgc
attcaggtcggccgcatctcgggcttcggtctgatggaaatgtcgcgccagcgtctgcgt
ccggggatgatcgaatccactacgcagccctgcccgcattgccacggcaccggcctcatc
cgctcggatgacagcatggcgctgcaggtcctgcgtgcgatcgaggaagaagccacccgc
aagcgcgcccgcgaggttctggtgcgcgtgcctgttgccgtggccaacttcctgatcaac
cagaagcgcgaacatatcgccctgatcgagtcgcgctacgggctttctgtccgtatcgag
gccgatccgacgctggtctcgcccgattacgtgatcgagaaattcaaaaccgcaacccgt
gtggtgcccgaagcggtgtccaatgtggttcatgccagtgcagagttcatgagcgagctt
gaagagctggatgcggccttggatgcggagatcgtcgaggaagacgaagacgaggcgccc
gaggctgccacggaaacgtcgaccgatgaaggcccgaagaagaagaagcgccgccgtcgt
cgccgtcggaaatcgggtgcggatcagctcaatgatgaggctgagaccgaatctgacgaa
gaggacagcgcccctgcggctgaggcagagccggacgtcgccgcagaagacgccgaaggc
gaggccacggcaccggaagttgcagaagaggcccccaagcccaaacgcagccggtcgcgg
tcgcgccgcaagcccaaagccgaggctgaggctgaggctgaggctgaggctgagaccaac
gccgaagcgggtgacaatgcggcagacaccactgccgaagccgaaactgcgcccgagacc
accgcggaagcagaagatgcgcccaagcccaagcgcagccggtcccgcgcgcgtcgttcg
aaaaaggacgagacgctcgctgtcgaggctgaggttgaggctgttgcagctccggcttcc
gggactgttgcagacacggcccccgccgcggaggcggtagcctctgttccggaagccgat
gcaggtctggcagaaatcgcctcccctgcggcaccggttgccgaagcccccgccgcagag
gcaccggttgcagaggcagcggttggcgaggtcatcacggcacaggcaccggtcgcagaa
cgcgcgaaggaaagcacagccgaacccgaagccgcgcaggcggaagcggataacgcgccc
aaacgccggggctggtggaacgtcggcaactaa
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