Thioclava litoralis: RPE78_14630
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Entry
RPE78_14630 CDS
T10820
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tlb Thioclava litoralis
Pathway
tlb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPE78_14630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlb03019
]
RPE78_14630
Enzymes [BR:
tlb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPE78_14630
Messenger RNA biogenesis [BR:
tlb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPE78_14630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WRY35485
UniProt:
A0ABZ1E458
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All DBs
Position
unnamed1:complement(225447..226763)
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AA seq
438 aa
AA seq
DB search
MFDFDMLGLSPALKDALKAQGFTEPTPIQNKAIPLAMQGHDILGLAQTGTGKTLAFGLPL
IDQLLQAPGKPAPKTAKALILAPTRELVNQIADGLRALTKGTRIHIITVVGGQSINRQIG
ALHRGCDILVATPGRLIDLMDRGSVDLSQTKHLVLDEADQMLDLGFIHALRKIAPRLGTP
RQTMLFSATMPKQMEELSKAYLNNPQRVQVSPPGKAADKVSQSVQFMDKAEKPNRLRKIL
SNDMGALTLVFCRTKHGAEKLKKSLEKDGYPAASIHGNKSQNQRDRAIESFRAGSTTILV
ATDVAARGIDIPGVAYVINFDLPEVPDSYVHRIGRTARAGREGQAIAFCSEEEVELLAQI
EKLMKIDIPVAAGTRPEGTSPAPRGRRRGGPPKAGAVRAFKPANEANSGGPRRRRNKPQG
AKRGPADPGAAKRRAPQS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatttcgatatgctggggctgtccccggcgctgaaagatgcgctgaaagcgcaa
ggctttaccgagccgaccccgatccagaacaaggccattccgctggccatgcaaggccat
gacattctggggctcgcccagaccggcaccggcaagacgctggccttcggcctgccgctg
atcgaccagttgctgcaggccccgggcaagcccgcgccgaaaaccgccaaggcgctcatc
cttgcccccacccgcgaactggtcaaccagatcgccgacgggctgcgcgcgctgaccaaa
ggcacccgcatccatatcatcaccgtggtgggcggccagtcgatcaaccgccagatcggt
gcgctgcatcgcggctgcgacattctggtggcaacgccgggccgtctgatcgacctgatg
gaccgcgggtcggtcgatctgtcgcagaccaaacatctggtgctcgacgaggccgaccag
atgctggatctcggcttcatccatgcgttgcgcaagatcgcgccgcgtctgggcacgccg
cgccagaccatgctgttctcggccaccatgcccaaacagatggaagagctctccaaagcc
tatctcaacaacccccagcgcgtgcaggtcagcccccccggcaaggccgccgacaaggtc
agccagtcggtccagttcatggacaaggccgaaaagcccaaccgtctgcgcaagatcctg
tccaacgatatgggcgcgctgacactggttttctgccggaccaagcacggggccgaaaag
ctcaagaaaagcctcgagaaagacgggtatccggccgcctcgatccacggcaacaaaagc
cagaaccagcgcgatcgcgcaatcgagagtttccgtgccggttcgaccaccattctggtc
gccaccgacgtggctgcccgcggcatcgacattccgggcgtggcctatgtgatcaacttc
gatcttcccgaagtgcccgattcctacgtccaccggatcggccggaccgcgcgtgcgggc
cgcgaaggtcaggcgattgccttctgctccgaggaagaagtcgaacttctggcacagatc
gaaaagctgatgaagatcgatattccggttgcggcaggcacgcgccccgaaggcacctcc
cctgccccgcgtggccgtcgtcgcggcggtccgccgaaagccggtgccgtgcgggccttc
aaacccgcgaatgaggccaattccggtggcccgcgtcggcgccggaataaaccgcagggg
gccaaacggggccccgccgatccgggagcggccaaacgccgcgcaccgcaatcctga
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