Thioclava litoralis: RPE78_15880
Help
Entry
RPE78_15880 CDS
T10820
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
tlb Thioclava litoralis
Pathway
tlb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tlb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPE78_15880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlb03400
]
RPE78_15880
Enzymes [BR:
tlb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RPE78_15880
DNA repair and recombination proteins [BR:
tlb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RPE78_15880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WRY35712
LinkDB
All DBs
Position
unnamed2:12628..14064
Genome browser
AA seq
478 aa
AA seq
DB search
MEEVILPHIGTVAAWREKARGLAARGVPAEAVLWRVGDAAPDLFGPELFGGMAAPQAAPV
TLTLPRAALGEIECALHHSDPERFARAYDIVLRLSRGDLRWGDREDPALHRLIAQAKHVR
RDIHKMHAFVRFREITAESANRRAFAAWFEPDHPIVEPATPFFAKRFGDMDWVIATPSLT
ARFEAGQLSYSETEDRSPPPEDATEELWRTYFTHIFNPARLMVKAMTSEMPRKYWKNLPE
AQLIPEMIRQAPARARAMQDAMPTPKAALADRLRPAPKELPSEIALETMKPALDACRRCA
IGPCATQGVAGEGPASARVMVVGEQPGEQEDLKGRPFIGPAGQLFDQCARAARLDRERIW
LTNAVKHFKFTPRGKQWLHQAPNAGEVKACRWWLDLERQLIKPDLVVAMGATAAASLTGT
GKGLVERAGQIETLPDGTPCLITYHPAHLLRLPDPQLAQARQAAFTASLRRAADWPLA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtcatcctgccccatatcggcacggtggcggcttggcgcgagaaggcgcgg
ggcttggcggcgcggggtgtgcctgccgaggcggttttatggcgggtaggcgatgcggct
cccgatctttttggccccgaactttttggtggcatggccgcgcctcaggccgcccccgtc
accctcaccctgccccgtgcggcgcttggcgagatcgaatgcgcgctccatcattccgac
cccgagcggtttgcccgcgcctatgacatcgtgctgcggctgtcgcgtggggacttgcgc
tggggcgaccgcgaggaccctgcccttcacaggctgattgcgcaggccaaacatgtgcgg
cgcgacatccacaagatgcatgccttcgtgcgcttccgcgagatcaccgccgaaagtgct
aaccgccgtgcttttgcggcatggttcgaacccgaccacccgattgtcgaacccgcgacg
ccgttctttgccaagcgtttcggagatatggattgggtgatcgcgacccccagcctgacc
gcacgctttgaggcgggccagctgagctatagcgagaccgaagaccgcagccctccgccc
gaggatgccaccgaagagctatggcgcacctatttcacccatatcttcaaccccgcgcgg
ctgatggtgaaggcgatgacctccgagatgccgcgcaaatactggaagaacctccccgag
gcgcagctgatccccgagatgatccgccaagcgcctgcgcgggcgcgtgccatgcaggac
gcgatgcccacgcccaaggcggccttggccgaccgcttgcggcccgcgccgaaagagctg
ccctcagagatcgcactggagacgatgaaacccgcgctggacgcctgccgccgctgtgcg
attggcccctgtgccacgcagggggtggcgggggaaggtccggcctcggcgcgggtaatg
gtggtgggcgaacagcccggagaacaggaagacctcaagggacgccccttcatcggccct
gcggggcagctctttgaccaatgcgcccgcgcggcgcggctggaccgtgagcggatctgg
ctgaccaatgcggtgaagcacttcaagttcactccgcgcggcaagcaatggctgcatcag
gcaccgaatgcgggcgaggtgaaggcctgccgctggtggctcgatcttgaacgccagttg
atcaagcccgatctggtggtggcgatgggggcaaccgccgcagcctctctgaccggcacc
ggcaaggggcttgttgaacgcgccggacagatcgagacgcttcctgatggcaccccctgc
ctgatcacctatcaccccgcgcatcttctgcgcctgcccgatccgcagcttgcacaggcg
cggcaggccgcctttaccgccagcctgcgacgtgccgccgattggccgttggcctag
DBGET
integrated database retrieval system
