Thiothrix lacustris: RCF98_01470
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Entry
RCF98_01470 CDS
T09396
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RCF98_01470 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_01470 (recD)
Enzymes [BR:
tlc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RCF98_01470 (recD)
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RCF98_01470 (recD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
SH3_13
Helicase_RecD
SLFN-g3_helicase
nSTAND3
AAA_22
UvrD_C
NPHP3_N
AAA_16
NTPase_1
ATPase
AAA_28
AAA
Motif
Other DBs
NCBI-ProteinID:
WML91035
LinkDB
All DBs
Position
complement(325186..326775)
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AA seq
529 aa
AA seq
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MPSAPHPVHPVHPLDDQLANLLKRLDGGVSQRGLVALIREVSARTREGVIAVPLAETPLA
ELFDSPVVGREGDYKPLILSDTHAWLYRYWHYEDRLAKCIRSRLPDDKLLIISGGPGTGK
TTKVTRILADLIADGIEPARILLAAPTGKAAMRMQESIRDTRQRENITCPMPEQSSTLHR
LLGFIPNRVGFRHHANNPLPADVVIVDEASMIDISLMTHLFEAVPPQAKLILLGDKDQLA
SVETGSIFRDLCSGDALAKQMLLLQTSYRFSDADGVGQLAQAIREADEERLLDVLASPDF
ATVTLDESQAGLNANWLREGWQDYVAAVRVGEQDAIFRAFNALRILTPLRQGRLGVEALN
VWVDGVMQRLLPAHEGAQRPWYVGRPVMVTQNDYRQNLFNGDIGIALPNEKGELRVWFPT
GEAGEYRAVAPIRLPAHETAWAMTIHKSQGSEFTRVLLILPEAEDLPLLGRELLYTAVTR
AKTGIHILASRAMLGKALRQVAPPASQLQERLAAYSSSVIASPSAPSLD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctgcgccccaccccgttcatcccgtccacccactcgatgaccagcttgctaac
ttgctgaaacggctggatggcggggtgagtcagcgggggttagttgccctgatccgtgag
gtcagtgcgcgtactcgtgagggcgtgattgcagtgcctttggcagaaactccgctggcg
gaactgtttgattcgccggtggtggggcgtgaaggtgattataagccactgattttaagc
gatacccatgcgtggctgtatcgctattggcactatgaagaccggctggcaaaatgcatc
cgctcacgcttgcctgatgacaagctgctgattatttccggtgggcccggcacgggtaaa
accaccaaagttacccgtattttggctgatttgattgcggatggaatagaacctgcccgc
attctgctagcagcaccgaccgggaaagcggcgatgcgtatgcaggaatccatccgcgat
acccgccaacgtgaaaacattacttgccccatgcctgagcaatccagcaccttgcaccgc
ttgctgggttttatccccaatcgggtaggctttcgccatcatgccaacaatccgttgcct
gctgatgtggtgattgtcgacgaagcctcgatgatcgacatttccctgatgacgcatttg
tttgaggccgtgccgccgcaagccaagctgattttgttgggtgacaaggatcagttggcc
tcggtggaaactggctcgattttccgcgatttatgcagcggtgatgcgttggctaaacag
atgctgttgttgcaaaccagttaccgtttcagtgatgcggatggtgtcgggcaactggca
caagctatccgtgaggctgatgaggaacgtttgctggatgtgctggcttcccccgatttc
gccacggtgacgctggatgaatcgcaggcggggctgaatgctaattggctgcgtgaaggt
tggcaagattacgtggcggcggtcagggtaggggagcaggacgctattttccgcgccttc
aatgccttgcgcatcctgacaccgttgcggcaagggcgtctgggcgtggaagcgctgaat
gtgtgggtggatggtgtcatgcaacgcctgctgcctgcgcacgaaggggcgcaacgcccg
tggtacgtgggtaggccggtgatggtgacgcagaatgattaccgccagaacctgttcaac
ggcgacatcggcattgccttgccgaacgaaaaaggtgaattgcgggtgtggtttccaacc
ggggaggcgggagaataccgggcggttgcaccgatccgtttgcctgcgcacgaaaccgcg
tgggcgatgaccatccacaagagccaagggtcggaatttacgcgggtattgctgatcttg
ccggaagcggaagacttgccgttgctggggcgggaattgctgtataccgccgtgacgcgg
gcgaagaccgggattcacatcctcgccagtcgagcgatgctgggcaaagccttgcggcag
gtggcgccgcctgcgtcgcagttgcaggaacggctggctgcttattcttcgtccgttatt
gcttcgccatccgcgccttctttggattga
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