Thiothrix lacustris: RCF98_08050
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Entry
RCF98_08050 CDS
T09396
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
tlc
Thiothrix lacustris
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tlc03016
]
RCF98_08050 (truD)
Enzymes [BR:
tlc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
RCF98_08050 (truD)
Transfer RNA biogenesis [BR:
tlc03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RCF98_08050 (truD)
Prokaryotic type
RCF98_08050 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
WML92281
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All DBs
Position
complement(1676567..1677619)
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AA seq
350 aa
AA seq
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MNQTPYDTSGFPTAYPAPLTGHFRVLPADFIVDEQMDFALSGEGEHLWLQVRKTGANTDW
VGNQLARCAGISGKDVSYAGLKDRHAVTTQWFSLQLPGRDDPDFAALPPEIEILAQSRHD
KKLRRGALSGNRFSLTLRHCTGDFAEAAALCQQISQQGIPNYYGEQRFGHNFGNLRKAER
WFAEGIAPKQRTQRSLYLSAARSWMFNYILAERVRTGTWNQRLPGDVFMFEGGNAWFADD
VADATIQPRLDALDIHPTGALWGRGELDTQAQARELEAAQTALFPVFCAGLEKQGLKQER
RALRIKVGEVGFEVLDAETVQLSFELPPGSYATVFMEQLGTFTSKSVPSR
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaccccatacgacacttcaggctttccgacagcctaccccgcgcccttaacc
gggcattttcgcgtcttgcccgctgattttatcgtggatgagcaaatggacttcgcgctt
tccggcgaaggcgaacacttgtggttgcaagtccgcaaaacgggcgcaaacaccgattgg
gtaggcaatcagcttgcccgttgtgccggtatttcgggcaaggatgtgagttacgccggg
ctgaaagatcgccatgcggtcacaacccagtggtttagcctgcaactgccgggcagggat
gacccggactttgccgccttaccgcctgaaattgaaatcctcgcccagtcgcgccacgac
aagaaactgcgccggggtgcgctcagtggcaaccgttttagcctgactttgcgtcattgc
accggcgattttgccgaagcggctgccctttgccagcaaatcagccagcaggggattccc
aactattacggcgaacagcgtttcgggcacaactttggcaatttgcgcaaggcggaacgg
tggtttgcggaaggcatcgctcccaagcagcgtacccagcgtagcctttacttgtcggcg
gcgcgttcgtggatgtttaactacattctggcggagcgggtgagaacggggacgtggaat
cagcgtctgccgggtgatgtgtttatgttcgagggtggcaatgcgtggtttgccgatgat
gtggcggatgcgaccattcagccgcgtttggatgcgctggatattcaccccaccggcgca
ttgtgggggcggggcgagctggatacccaagcgcaagcccgcgagttggaagcggcgcaa
acagcgttgttcccggtgttctgtgcggggttggaaaagcagggtttgaagcaggaacgc
cgtgccttgcgtatcaaggtgggtgaggtcggttttgaggtgctggatgcggaaaccgtg
cagctttcctttgagctgccgccggggtcttatgccacggtgtttatggagcagttgggg
acgtttacgtccaagtctgtgccatcacgctag
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