KEGG   Thiothrix lacustris: RCF98_08325
Entry
RCF98_08325       CDS       T09396                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
tlc  Thiothrix lacustris
Brite
KEGG Orthology (KO) [BR:tlc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tlc03016]
    RCF98_08325
Enzymes [BR:tlc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     RCF98_08325
Transfer RNA biogenesis [BR:tlc03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    RCF98_08325
 Prokaryotic type
   tRNA splicing ligases
    RCF98_08325
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: WML92333
UniProt: A0ABY9MUL2
LinkDB
Position
complement(1729493..1730695)
AA seq 400 aa
MPISFMLNKGKVPVKIFTDDVDSGSLTQLGNLSQLPFIHSHIAAMPDVHHGIGATVGSVI
PTRGAIIPAAVGVDIGCGMNAVRLSLKAHDLPDNLYNIRSAIEQRVPTGFDEHVRPTLNG
STLNNMGKHLDVITDKHPGLVKMLKNFHRQWGKQLGTLGGGNHFIELCLDESDDVWVMLH
SGSRGVGNAIGRYFIEKAKKDVGRELGQLPDKDLAYFTEGTQHFDDYVEAVGWAQDYATV
NRREMMRLVLDALQRSKALPAFTTTREAINCHHNYVQKEEHFGAEVYLTRKGAISAQLGQ
LGIIPGSMGAKSYIVRGLGNAQSFCSCSHGAGRRMSRSEAKRRFNTLDLEAQTKGIECRK
DKGVVDEIPGAYKDIDVVMQNQSDLVEVVHTLRQVICVKG
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgcctatcagttttatgctcaataagggcaaagttccggtcaagattttcaccgacgat
gtggacagcggctcgctgacacaattggggaatttgtcgcaactgcccttcatccacagc
cacattgcggcgatgccagacgtgcatcacggcattggtgcgaccgtgggttcagtgatt
cccacacgcggcgcgattattccggcggcggtgggggtcgatattggttgtgggatgaat
gcggtgcgtttgtcactcaaagcccacgacttgcccgataacctgtacaacatccgcagt
gcgattgaacagcgcgtacccacgggttttgatgaacacgtgcgccccaccctcaacggt
tctaccctcaataacatggggaagcatctggatgtgattaccgacaagcaccccggtctg
gtgaaaatgttgaaaaactttcaccgccaatggggtaagcaactcggcacactcggcggc
ggcaaccatttcattgagctgtgcctcgacgaaagcgacgacgtgtgggtcatgctgcat
tctggcagtcgcggggtaggtaacgccatcgggcgctatttcatcgaaaaggccaaaaag
gatgtgggtcgcgaattggggcaactccctgacaaggatttagcctacttcaccgaaggc
acgcagcatttcgatgattacgtggaagcggtcggctgggcgcaggattacgccacggtc
aaccgtcgcgaaatgatgcggctggtgctggatgccctgcaacgcagcaaagctttgccc
gcattcaccaccacccgcgaagcgatcaactgccaccacaactacgtgcaaaaggaagag
cacttcggtgcggaagtctacctgactcgcaagggtgccatcagtgcgcaactggggcag
ctcggcattattcccggcagcatgggcgcgaaatcctacatcgtgcgcggcttgggtaat
gcgcaatcgttctgctcgtgctcgcacggtgcggggcgacgcatgagccgctctgaagcc
aaacggcgtttcaacaccctcgatctggaagcgcagaccaagggcatcgaatgccgcaag
gacaaaggcgtggtcgatgaaattcccggcgcgtacaaagacatcgacgtggtgatgcag
aaccaaagcgatctggtcgaggtcgtacatacactgcgtcaagtcatttgcgtgaaaggt
taa

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