Thiothrix lacustris: RCF98_08750
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Entry
RCF98_08750 CDS
T09396
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
tlc
Thiothrix lacustris
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlc03032
]
RCF98_08750 (gyrB)
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_08750 (gyrB)
Enzymes [BR:
tlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RCF98_08750 (gyrB)
DNA replication proteins [BR:
tlc03032
]
Prokaryotic type
DNA Topoisomerases
RCF98_08750 (gyrB)
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RCF98_08750 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Mod_r
Motif
Other DBs
NCBI-ProteinID:
WML89063
LinkDB
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Position
complement(1807362..1809794)
Genome browser
AA seq
810 aa
AA seq
DB search
MTEPTIPPTYDSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGY
CKEVKVELFSDGSVRVSDDGRGIPVDMHEEEGRSAAEVIMTVLHAGGKFDDNSYKVSGGL
HGVGISVVNALSANLELTIRRNGKLYQQMYKLGDPVAPLAIIGDTEGTGTSVRFWPSAEI
FALTEFHYDILAKRLRELSFLNSGVRIHLLDRRGEGREDVFEYEGGIKAFVAHLNRNKSP
IHNNIIYFTTERDDVGVEVALQWNDSYQENIFCYTNNIPQRDGGSHLSGFRAALTRTLNS
YIESAGLAKKEKISPTGDDAREGLTAVLSVKVPDPKFSSQTKDKLVSSEVKGIVEAAMNE
RLGEFLLESPGEAKLIAGKMIEAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDP
ALSELFLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVERARFDKMISSQEVGTLIIALG
CGIGREEYNIDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQLPELVERGYIYIAQPPLY
KAKRGKQEQYIKDDNEMERYLLQLALDGSNLHLNAHSPAISGEALETLMRQYNAAKQVIA
RLSRRYDRNLLEALLFENLPSSEEVSSVSAESFAEWVGNAVATMNAADNGARTYTSHLNK
IDDSAWALEVNRRQHGLDHRIMLDRDFFLMPETKLLIKTNREMDGLLGEGAVVVRGERKH
EAQRFDQVVEWLMKEANRGLQISRYKGLGEMNPEQLWDTTLNPETRRLMQVRVEDAIAAD
EVFTMLMGDEVEPRRDFIEKNALSVSNLDV
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaccaaccatcccaccaacctacgattcctcgaatattaaagtactcaaaggc
ttggaagcggtacgcaaacgcccgggcatgtacatcggcgacaccgatgacggtaccggt
ttgcaccacatggtattcgaggttgtggataactccatcgacgaagcgctggcgggttac
tgcaaggaagtcaaagtcgaattgttcagtgatggctcggtcagggtttcggatgacggg
cggggtattccggtcgacatgcatgaagaagagggtcgttcggctgccgaagtcattatg
accgtgctacacgcaggcggtaagtttgacgacaactcctacaaagtctccggtggtttg
cacggcgtgggtatttccgtggtcaatgcgctgtcggccaatctggaactgactatccgc
cgcaacggcaagttgtaccagcaaatgtataagctcggtgatccggtagcgccgttggcg
atcattggtgataccgaaggaaccggcacatcggtacggttttggccgagtgccgagatt
tttgcgctgaccgaattccattacgacatccttgctaagcgtttgcgcgaactgtcgttc
ctcaattccggggtgcgcattcatttgctcgaccgccggggcgaaggtcgtgaagacgtc
tttgagtatgaaggtggcattaaagctttcgttgctcaccttaatcgcaacaaatcaccg
attcataacaacatcatttacttcaccactgaacgcgacgatgtgggcgtggaagtggcg
ctgcaatggaacgattcgtatcaggaaaatattttctgttacaccaataacatcccacaa
cgtgatggcggttcgcatttatccggtttccgcgctgcgctcacccgcaccctcaatagc
tacattgaaagtgctggattggcgaaaaaagaaaagatcagcccgaccggtgatgatgct
cgtgaaggtttgactgccgtattgtcggtcaaggtgcctgaccccaagttctcctcacaa
accaaagacaagctggtgtcttcagaggtcaaaggtattgtcgaagctgccatgaatgaa
cgcctaggcgagttcctgctagaaagccccggcgaagccaagctgattgcaggcaagatg
atcgaagccgcccgcgcccgtgaagcagcgcgtaaagcccgtgaaatgacgcgtcgtaaa
ggggcgctggatattgcgggcttacccggcaaactcgcggactgccaggaaaaagaccca
gcactgtccgaattattcttggtggaaggggattccgccggtggttccgccaagcaaggc
cgtgaccgccgtacccaagctatcctgccgctcaagggtaaaatcctcaatgtggaacgg
gcgcgtttcgacaagatgatcagctcacaagaagtgggtacgttgattattgccttgggt
tgcggaatcgggcgcgaagaatacaatatcgacaaattgcgttatcaccgcatcattatc
atgacggatgcggacgtggacggttcacacatccgcaccttgctgctgaccttcttctat
cggcaattgccggaattggtggagcgtggttatatttatattgcgcaaccgcccttgtac
aaagccaagcgcggcaagcaagagcaatacatcaaagacgacaacgagatggaacgttac
ttgctgcaattggcattggatggttccaacttgcatctaaatgcgcattcccccgcgatc
agtggtgaagcgcttgaaacattgatgcgtcaatacaatgctgctaaacaagtgattgcc
cgcttatcccgtcgttatgatcgtaatctgttggaagctttattgtttgagaatctgcca
tcctcagaggaagtcagcagcgttagtgctgaatcttttgccgagtgggtaggtaatgca
gttgccaccatgaatgcagccgacaatggtgcacgcacttacacctcgcacttaaataaa
attgacgacagtgcttgggcactggaggtgaatcgtcgtcagcatggccttgaccaccgc
attatgctcgaccgcgatttcttcctgatgccggaaaccaagttgctgatcaaaaccaat
cgcgaaatggatggtttgttgggtgaaggcgcggtagtcgtgcgcggtgaacgcaaacac
gaagcgcaacgcttcgaccaagtggtcgagtggctgatgaaagaagccaaccgtggtttg
cagattagtcgctataaaggtttgggggaaatgaatcctgagcaattatgggataccaca
ctgaaccccgaaacccggcgtttaatgcaggtgcgtgttgaagatgcgattgccgccgat
gaagtgtttaccatgctgatgggcgacgaggtggaaccacgccgtgatttcatcgaaaaa
aatgcgttatctgtttccaatctggatgtatga
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