Thiothrix lacustris: RCF98_09325
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Entry
RCF98_09325 CDS
T09396
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RCF98_09325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_09325
Enzymes [BR:
tlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RCF98_09325
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RCF98_09325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
AAA_22
PIF1
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
WML89176
LinkDB
All DBs
Position
1930378..1932420
Genome browser
AA seq
680 aa
AA seq
DB search
MTQAPSRYILHIAVPRPLRTLFSYSYANVSAPLLGTRVLIPLGKQSAVGLVIRAEIAPPE
TADSPFTLKPVEALLDTTPLPDAHLLELLHWAARYYHHPVGEVIFSALPVALRKPKPLSS
RLQKLLGRYEAPTLAPIERNHLQLTDEQQQCLHSIEQWNLQAPLRPILLHGITGSGKTEI
YLRLIAPLFAAGKQVLVIVPEIGLTPQLLLRFAHFFGDTPMACLHSALSDGERMKAWLQA
RSGEARIIIGTRSAIFTPAPNLALIVIDEEHDASLKQQEGFRYHARDLAIKRAQMLNIPI
VMGTATPSLESLYNADTARFHYVRLNQRPGTTRKPDLQIQDTRPFELQAGLTPHSLQAIR
TTLARGEQVMVFLNRRGFAPALYCPSCGWQASCQHCSVKMTWHARRNKLVCHHCGAEQAT
PLRCPQCQNPQLTTQGQGTERLELALQTHFPAAVVVRIDRDSTSRKGELEAKLATVRSND
PLILVGTQMLAKGHDFPNLTLVIILDIDQSLLSTDYRALERLGQLLIQVAGRAGRADKAG
RVILQTSQPDHPMLHQLVGHGYTPFARQLLEDRKRWHFPPFGYQALIRASSTASMEKALQ
FLEQISQLLIVTDGADIQRLGPIPALLEKRANRYRAQLLLGSQHRAALHAALLQLLNPSV
KLPGRSGIRWSVDVDPIDFS
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagctccttcccgttacattctccatattgctgtgccgcgcccgttgcgcact
ttgttcagttacagctacgccaatgtctcagcgccgttgttgggaactcgcgtcctcata
cccttgggaaagcaatctgctgttggcctagtgatccgtgccgaaatcgccccacctgaa
acggctgatagccccttcacgttgaagcccgtggaagctcttcttgatacgacgcccttg
ccggatgcacacctgcttgagctgctgcactgggcagcccgttattaccaccacccggtt
ggagaagtgatcttttctgccttgccggttgccttgcgcaaacccaaaccattatccagc
cgcctgcaaaaactgttgggtcgttacgaagcaccaaccctcgcgcctattgaacgtaat
cacctgcaactcacggatgaacagcagcagtgcctgcacagcatcgagcaatggaacctg
caagcgccacttcgccccattctgctgcatggtattaccggcagtggcaaaaccgaaatc
tacctgcgcctgattgccccgctgttcgctgctggcaagcaagtgctggtgattgtgccc
gaaatcggcctgaccccgcagttgctgctccgctttgcgcattttttcggtgatacgccg
atggcttgcctgcattctgccctgagtgatggggaacgcatgaaagcatggctgcaagcc
cgcagcggtgaagcccgtattattattggaacccgttccgcgattttcacgcccgcaccc
aaccttgcgctgatcgtgattgatgaggagcacgatgcttccctcaaacagcaggaaggc
ttccgctaccatgcccgcgatctcgccatcaaacgggcgcagatgctcaatattcccatt
gtcatgggtacggctaccccgtcgctggaatcgctctacaatgcggatacggcacgtttt
cactacgtgcgcctcaaccagcgccccggtacgacccgtaaacccgatttgcaaattcag
gatacccgcccgtttgaattacaggcaggtttgacgccgcatagcctgcaagccatccgc
accaccttggcgcgtggtgaacaagtcatggtctttctcaaccggcgcggctttgccccg
gccttgtattgcccctcctgtggctggcaggccagttgtcagcattgcagcgtcaagatg
acttggcacgcccgccgtaacaaactggtttgccaccattgcggggcggaacaggccacg
cccttacgttgcccgcagtgccagaaccctcaactcaccacgcaagggcaaggtacggaa
cggctggaactcgccctgcaaacccactttcccgcagcggtggtggtgcggatcgaccgc
gacagcaccagccgcaagggggaactcgaagccaagctcgccacggtacgcagcaacgac
ccgctgattctggtcggtacgcaaatgctcgccaaaggccacgacttcccgaacctgacg
ttggtcattatcctcgacatcgaccagtcgctgctcagcaccgattaccgggcgctggag
cggttggggcaattgctgatacaagtggcggggcgtgccgggcgtgctgacaaggcgggc
agggtgatcctgcaaaccagccagcccgaccacccgatgctgcatcagctggtggggcat
ggttacacccctttcgctcggcaattgttggaagaccgtaaacgctggcattttccaccg
ttcggctatcaggcgctgattcgtgccagcagcacagccagcatggaaaaagccctgcaa
tttctggaacagatcagccaactactgatcgttactgacggtgcagatattcagcggcta
gggcctattcctgcgttactggaaaaacgcgccaaccgctaccgcgcccaattattgctc
ggtagccagcaccgcgccgcgctccatgctgccttgctgcaactgttgaatccctcagta
aagctgccggggcgctcgggaatacgctggtctgttgatgtagacccaattgacttcagc
tag
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