Thiothrix lacustris: RCF98_09995
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Entry
RCF98_09995 CDS
T09396
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tlc
Thiothrix lacustris
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlc03032
]
RCF98_09995
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_09995
Enzymes [BR:
tlc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RCF98_09995
DNA replication proteins [BR:
tlc03032
]
Prokaryotic type
DNA Topoisomerases
RCF98_09995
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RCF98_09995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WML89303
LinkDB
All DBs
Position
2054388..2056892
Genome browser
AA seq
834 aa
AA seq
DB search
MSENLVIVESPAKGKTIQKYLGNGFEVLASYGHVRDLIPKEGAVDTENGYAMRYEIIDRN
QKHVDAIARALKKADNLYLATDPDREGEAISWHLYELLKERGALEGKNVQRVVFHEITKR
AVQEAIENPRELATDLVDAQQARRALDYLVGFNLSPLLWRKIKPSLSAGRVQSPALRLIV
EREDEIERFVRQEYWTMTAQNAKDEQAFTARLHTLDSHKLDQFDINNEARASEVRERLLK
AANGKLLVSKVDKKQRKRYPAPPFTTSTLQQEAVRKLRFSTQRAMRVAQQLYEGIDLGSG
PIGLITYMRTDSVTLANEAIGELRGLIEQRYGQDKLPETPNFYKTKSKNAQEAHEAVRPT
SAFRTPEQVKSHLNEEQFKLYELIWKRTVACQMVFATLDTVSADLTAEAGSFFRASGSTI
RDPGFLLVYEEGQDDRASEKESTLPLLVEGDSVTLQDIAAEQHFTEPPPRYSEASLVKTL
EEFGIGRPSTYASIISTLLAREYVELESRRFTPTDIGRIVTRFLTEHFTQYVDYDFTANL
ENELDEISRGEKEWVPVMDAFWQPFHKLVDDKMESVNRSDVLQSREIGIDPASGKPVSVR
LGRFGPMVQIGTKDDEEKPVFAGLRPGMKLDTVTLEEALELFKLPRQLGETEDGKAISTN
IGRFGAYVKFGDQFASLKKEDDPHTITLERALELIAEKKIKDAEKILVDFGNGIQILKGR
WGPYINKVVKRVKLQIRLPKDREPDSMTLEECEALIAVAAEAKSAKKGAKKAKEAAAKPD
GEATADAAEKPKAAKAAKPKAAPKKAPAKKPAAKKPAAKKATATKTTAPKKSAS
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaatttggtaatcgtcgaatctccggcgaagggaaaaaccatccagaagtac
ttgggtaatgggtttgaagtgctggcctcctacggccatgtacgtgacctgattcctaag
gaaggcgcagtagacaccgaaaatggttatgcgatgcgctatgaaatcatcgaccgcaat
caaaagcatgtcgatgcgattgcgcgtgccttgaaaaaagccgataacctttatctcgcg
actgacccggacagggaaggcgaagccatttcctggcatttgtacgaattgctcaaggaa
cgtggcgcactcgagggcaaaaatgtccagcgcgtggtgttccacgaaatcactaagcgt
gcggttcaggaagctatcgaaaatccgcgtgaactggccaccgatctggtggatgcacag
caagcccgtcgggcgctggattatctggtcggtttcaacctttccccgctgctgtggcgc
aagatcaagccgagcttgtccgccgggcgggtgcaaagccctgcgttgcgcttgattgtg
gagcgtgaagacgaaatcgagcgtttcgtccgtcaggaatactggacgatgaccgcgcaa
aacgccaaggatgaacaagccttcaccgcgcgtttgcacacactggatagtcacaaactc
gaccagttcgacattaataatgaagcgcgggccagcgaagtccgcgaacgcttgctgaaa
gcggccaatggcaagttgctggtcagcaaagtcgacaagaaacagcgtaagcgttacccc
gcgccgccgtttactacctcaaccttgcagcaggaagcggtgcgcaagctacgtttttcc
acccaacgcgcgatgcgggttgcccagcaattgtacgaaggcattgacctcggcagtggc
ccaatcggtttgattacctacatgcgtaccgactcggtgacgctggcaaacgaagccatc
ggtgaattgcgcggcctgatcgagcagcgttacgggcaagataaattgccagaaaccccg
aatttctacaaaaccaaatccaaaaatgcgcaggaagcgcatgaagcggtgcgcccgacg
tcggccttccgcacccctgagcaggttaaaagccacctcaacgaagaacagttcaagctg
tatgagctgatctggaaacgtaccgtggcttgccagatggtcttcgccacgctggacacg
gtgtcggctgatttgacggcggaggcgggcagtttcttccgcgcctccggttctaccatt
cgtgaccccggtttcctgctggtgtacgaagaaggtcaggatgaccgcgccagtgaaaaa
gaaagcacgctgccattgctggtagaaggcgatagcgtgaccttgcaagacattgccgcc
gagcagcatttcaccgagccgccaccgcgttattcggaagcctcgctggtcaaaacgctg
gaagaatttggcattggtcgcccgtcgacttacgccagcattatttctaccttgttggcg
cgtgaatacgtcgaactggaaagccgccgttttaccccgactgatattgggcgcatcgtg
acccgctttttgacggagcatttcacccaatacgtcgattacgatttcaccgcgaatctc
gaaaacgagctggatgaaatttcacgcggcgaaaaagaatgggtgccggtgatggatgcc
ttctggcagccgttccacaagctggtcgatgacaagatggaaagcgtcaaccgcagcgac
gtgctccagtcccgcgagattggcattgatccggccagtggcaagccagtatcggtgcgc
ttagggcgctttggccccatggtgcaaatcggcactaaggatgacgaggaaaagccagta
ttcgctggtttgcgccccggtatgaagctggatacggtgacgctggaagaggcgctggaa
ctgttcaagctgccgcgccaactcggcgaaaccgaagacggcaaggctatcagcaccaat
attgggcgctttggggcttacgtcaaattcggcgaccagttcgcttccctgaaaaaggaa
gacgacccgcacaccattaccttggagcgggcgctggaattgattgccgagaagaaaatc
aaggatgccgaaaaaatcctggtggatttcggcaatggcatccagatcctcaaaggccgt
tgggggccttacatcaataaagtggtaaagcgcgtcaaattgcagattcgcctgcccaaa
gaccgcgaacccgacagcatgacgctggaagagtgcgaagcgctgattgcggtcgctgct
gaagccaagagcgccaaaaaaggtgcgaaaaaggccaaggaagccgccgccaaaccagac
ggcgaagcaacggctgatgcagccgagaagcccaaggccgcgaaagcagccaagcctaaa
gctgcacctaaaaaagcaccagccaaaaagccagcggcgaagaaaccggcagcgaagaaa
gctacggcaactaaaaccacagctcccaaaaagtcagcgagttaa
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