Thiothrix lacustris: RCF98_10425
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Entry
RCF98_10425 CDS
T09396
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03030
DNA replication
tlc03430
Mismatch repair
tlc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCF98_10425
03430 Mismatch repair
RCF98_10425
03440 Homologous recombination
RCF98_10425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlc03032
]
RCF98_10425
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_10425
Enzymes [BR:
tlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RCF98_10425
DNA replication proteins [BR:
tlc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RCF98_10425
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RCF98_10425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
HATPase_c
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
WML89386
UniProt:
A0ABY9MNF7
LinkDB
All DBs
Position
2135320..2137500
Genome browser
AA seq
726 aa
AA seq
DB search
MRRVDWRVVMGVAGIGAICLVWLLATGGLIWSTLDEAGRTILKDTLGERIMLLLLMWAVS
LLAVGAALRWMVSYFMTAPARLAEQAQVLLGTNVKRQLEPTGSAENRRLTDLFNQLVQQR
EALREEMDVRVAEAARNTEQEKNRLAALMSELTKSVVVCNLDGRILLYNNRARMQFRKLS
QAPGVAGGGELIGLGRSVYGVFDRKLVAHALENIQHRLQRGAAAPSAQFITTTPSGQLLR
AQMAPVRAVQEADTAAPATMTGFVLMLDNITREFEAQARQDHILHTLTERSRAALGNMQA
ALDVLEYPDVEPDMRERLLTVLREETGGLGNRLRELKSSALDSTVLRWPLEDMLGADLVA
AAIRRIEALGGLTAVEAGVDDSLWLKVESFSLLQALSYLAERLRQECVISMVQLRLSMGT
GRAQLDLCWTPSAAKLTDKVVPGWEHDPMRSGGEDTSLTIQDVVERHGGAFWFEREPETG
TTFFRFLLPLAAPQEQLDSASLVQNESRPEYYDFDLFQPSAQSRSLEDSRLSELSFTVFD
TETTGLDPANGDEIIQIAAVRIVNGKLLRNENFDQLVDPKRNIPAITIPIHGITPEMVHG
QPTIDKVLPAFHQFAQDTVLVAHNAAFDMRCLQVKEKVTGLVFDHPVMDTLLLSAVVHPN
QESHRLEAITERFNINILGRHTALGDAMATAEVFMHLIPLLEEMGIYTLGQAREAAQKTY
YARLKY
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcgtggattggcgggtggtgatgggcgtcgccggtattggggcgatttgtctg
gtgtggttgctggcaaccggtggcttgatctggtcaacgctggatgaggcggggcgtacc
atcctcaaagacacgctgggtgaacgcatcatgctgttgctgctgatgtgggcagtgtcg
ctgctggcagtgggtgcagccttgcgctggatggtgtcgtatttcatgacagccccggca
cgcttggcagaacaggcgcaagtgttgctgggtacaaacgttaagcgccagttggaaccg
accggcagtgccgaaaaccgccgcttgaccgacttgtttaaccagttggtgcaacagcgc
gaagccttgcgggaagaaatggatgtacgggttgccgaggctgctcgcaataccgaacag
gaaaagaatcgccttgctgcgctgatgtcggaactcaccaaaagcgtggtggtgtgcaac
ctcgacgggcgcattttgctgtacaacaatcgggcgcggatgcagtttcgcaagctctcg
caagcacccggtgtggcgggcggtggcgagttgatcggcttggggcgttcggtttacggc
gtgtttgatcgtaagttggtggcgcacgcgctggaaaatatccagcaccgtttgcagcgt
ggggcagccgcgccttccgcacaattcattactaccacgccgtcggggcagttgttgcgg
gcgcaaatggcgccggtacgtgccgtgcaggaagctgataccgccgctccggcgacaatg
acgggtttcgtgttgatgctggataatattacccgcgaatttgaagcacaggcgcgtcag
gatcatatcctgcataccctgaccgaacgcagccgtgccgcgctgggcaatatgcaggcc
gcgctggacgtgctggaataccccgatgtagaacccgacatgcgtgagcgtttgctgacg
gtgttgcgggaagaaacgggcgggctgggcaaccgtttgcgcgaactcaagtcttcagcg
ctggatagcacggtattgcgttggccgttggaagacatgctgggcgcggatttggtggcc
gccgccatccgccgcattgaagccttgggtggtttgacggcggtggaagccggggtcgat
gattcgctgtggctgaaggtggaaagtttctcgctgttgcaagccttgtcctaccttgcg
gaacgtttgcggcaggaatgcgtgatcagcatggtgcaattgcgcctgagcatggggaca
ggccgcgcccaactcgatttgtgctggacgccaagcgctgccaagctgaccgataaagtc
gtgccgggttgggaacatgatccgatgcgttccgggggcgaagatacctcgctgacgatt
caggatgtggtggaacgtcacggtggcgcgttctggtttgaacgcgagcctgagacgggc
acaacctttttccgcttcctgttgccgctggcagcaccgcaagagcaactcgattccgcc
agtctggtgcagaatgagagccgcccggaatattacgatttcgacctgttccaaccatcc
gcgcaaagccgttctttggaagacagccgtttgagcgagttgtcgttcacggtgtttgat
acggaaaccaccgggcttgaccctgccaatggtgatgaaatcatccagattgcagcggtg
cggattgtgaatggcaagctgttgcgcaatgagaattttgaccaactggttgacccgaaa
cgtaatattccagcgattaccatcccgattcacgggattacgccggaaatggtgcacggg
cagccgacgatcgacaaggttttgcctgctttccatcagtttgcgcaagacacggtgctg
gtggcacacaatgccgcgtttgacatgcgttgcttgcaggtgaaggaaaaagtcaccggc
ttggtgttcgatcatccggtgatggatacgctgctattgtcggcggtggtgcaccccaat
caggaatcacatcggctggaggcgattactgaacgtttcaatatcaacattctggggcgg
catacggcgctgggggatgcaatggcgacggcggaagtgtttatgcacttgatcccgtta
ttagaggaaatgggtatttatacgctggggcaggcgcgggaagccgcccagaaaacctat
tatgcgcgtttgaaatattag
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