KEGG   Thiothrix lacustris: RCF98_10765
Entry
RCF98_10765       CDS       T09396                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
tlc  Thiothrix lacustris
Pathway
tlc02020  Two-component system
Brite
KEGG Orthology (KO) [BR:tlc00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    RCF98_10765
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:tlc02022]
    RCF98_10765
Two-component system [BR:tlc02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   RCF98_10765
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_3 FleQ AAA_7 HTH_50 AAA AAA_16 AAA_22 Herpes_BLRF2 AAA_2 DUF6716
Other DBs
NCBI-ProteinID: WML89453
LinkDB
Position
2210559..2211914
AA seq 451 aa
MIAPNIILVDDEKAVRDSTAQSLMLAGYEVETFSSAAEALHKITLEFEGVIISDIRMPEM
DGLEFLQRVLKIDRDLPVILISGHADVATAVAAIRKGGYDLLEKPFSNTQLVEVVKRAGE
KRRLTLENRALKEALENQTRPGPRIIGQTPSIMTLRKMITRIANVNADVLVMGETGTGKE
LVARSIHEQSLRRDHNYVAINCAAIPASLLDSELFGHEAGAFTGAQGKRIGKFEHANGGT
LFLDEIEGMPLLTQAPLLRVLQERKIERLGSNKLIPLDIRVIAATKVDLKGAAERAEFRQ
DLYYRLNVVTLEIPPLRARREDIPLLFQHFVLIAAARCETEVPPLNSQALHVLMGHDWPG
NIRELRNIAERYVLLGEAYNFDLAVLMNAGDKLEGLSLTQQVACFEKTLLVQALNHHQGN
TRAVMEALDLPRKTLTDKLKKYGLDREQFRE
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgatcgcgcccaacattattctggtcgatgacgaaaaagccgtgcgtgattccaccgcg
caatcgctgatgctggcgggttatgaggtggaaacctttagcagtgctgccgaggctttg
cataaaatcacgctggaattcgagggtgtgattatttccgatatccgaatgccggagatg
gatggtttggaattccttcagcgtgtcttgaaaattgaccgtgatttgccggttattttg
atcagtgggcacgccgatgtcgctaccgccgtagccgccatccgcaagggcggctatgac
ctgctggaaaagccattttccaacacccaattggtggaagtggtgaaacgcgccggtgaa
aaacgccgcctgacgctggaaaaccgcgccctgaaagaggcactcgaaaaccagactcgc
cccggcccgcgcattattgggcaaacgccctccatcatgaccttgcgcaaaatgattacc
cgcattgccaacgttaacgcggatgtgttggtcatgggggaaaccggcacgggcaaggaa
ctggtggcgcgttccatccacgagcaaagcctgcgccgtgatcacaattacgtggcaatc
aattgcgcggcgattcccgccagtttgctcgacagcgaattgtttgggcacgaggcgggg
gctttcaccggggcgcaaggcaagcgaatcggcaagtttgaacacgccaatggcggcacg
ctgtttctggatgaaattgaaggaatgccgctgctgacccaagcgccgctgctgcgggta
ttgcaggagcgcaagattgaacgactgggttctaataaattgattccgcttgatattcgc
gtgattgccgccaccaaggtcgatttgaaaggggcggcagagcgcgcggaattccggcag
gatttgtattaccgcttgaacgtggtgacgctggaaatcccgccgttgcgggcgcggcgt
gaagacattccgttgctgttccagcattttgtgttgattgccgccgctcgctgtgaaacc
gaagtgccgcccctcaacagtcaggcactgcatgtgttgatggggcacgactggccgggc
aatatccgtgaattgcgcaatattgccgagcgttacgtgctgctgggcgaagcttacaat
ttcgacttggcggtgctgatgaatgcgggtgacaaactcgaaggcttgtcactcactcaa
caagtggcctgtttcgagaaaaccctgctggtgcaagcgctcaaccaccatcagggcaat
acccgtgctgtgatggaagcgctggacttgccgcgcaaaacgctgaccgacaagctgaaa
aagtacgggctggatcgcgaacagttccgggagtaa

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