KEGG   Thiothrix lacustris: RCF98_10790
Entry
RCF98_10790       CDS       T09396                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
tlc  Thiothrix lacustris
Brite
KEGG Orthology (KO) [BR:tlc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:tlc03016]
    RCF98_10790
Enzymes [BR:tlc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     RCF98_10790
Transfer RNA biogenesis [BR:tlc03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    RCF98_10790
 Prokaryotic type
   tRNA splicing ligases
    RCF98_10790
SSDB
Motif
Pfam: RtcB Myb_Cef
Other DBs
NCBI-ProteinID: WML89458
UniProt: A0ABY9MLN2
LinkDB
Position
complement(2214561..2215793)
AA seq 410 aa
MTTTGNYEVLHEAGHAPVKSWTKGVPFDANAKQQVLNMAQMPFIHQWIAVMPDVHLGKGA
TIGSVIPTLGAVIPAAVGVDLGCGMMAAKTTLKASDLPDSLEAMRSQIERRVPHGRGENL
RGQRDPGSWGDAPDDVLNKWLTLSDGFQRLCEKHPFLKNTNNLSHLGTLGTGNHFIEVCL
DETQSVWVMLHSGSRGVGNKIGTHFIAQAKRDMERYFINLPDKDLAYIPEGSEHFRDYVE
AVAWAQDFAQANREVMMARTLQAIREVLPKPFSADVEAVNCHHNYIRKEHHYGQDVWVTR
KGAVSARAGEMGIIPGSMGAKSYIVRGLGNAESFCSCSHGAGRVMSRTEAKRRVSLDEHK
RAVAGVECRTDASVIDETPSAYKPIEKVMEAQSDLVEIMHTLKQVLCVKG
NT seq 1233 nt   +upstreamnt  +downstreamnt
atgaccactaccggcaactacgaagtcctccacgaagcaggccacgcccccgttaaatcg
tggacgaaaggcgtacccttcgatgccaatgccaaacagcaagtgctgaacatggcgcag
atgcccttcatccaccaatggattgcggtgatgcccgacgtgcatctgggaaagggcgcg
accatcggcagcgtgattccaacccttggcgcggtgattccggcggcggtcggtgtggat
ttgggttgcgggatgatggcggcaaaaaccaccttgaaagccagcgatttgcccgattca
ctggaggcgatgcgcagccagatcgaacgccgtgtgccgcacgggcgcggtgaaaacttg
cgcggtcaacgtgaccccggaagctggggtgatgcgcccgatgatgtgctgaataaatgg
ctgaccttgagcgacggttttcagcgtttgtgcgaaaagcacccgttcctgaaaaacacc
aataacctgagccacttgggaacgttgggaaccggcaaccattttatcgaggtgtgtctg
gacgaaacccagtccgtgtgggtgatgctgcatagcggttcacgcggggtcggtaacaag
atcggtacgcacttcatcgcgcaggcaaaaagggatatggaacgttatttcattaacctg
ccggacaaggatttggcttacatccccgaaggtagcgagcatttccgcgattacgtcgaa
gcggtggcgtgggcgcaggatttcgcgcaagccaaccgcgaagtgatgatggcgcgtacc
ttgcaagcgatccgcgaggtgttgccgaaaccgttttctgccgatgttgaagcggtgaat
tgccaccacaactacatccgcaaggaacaccattacgggcaggatgtgtgggtaacacgc
aaaggcgcggtgagtgcgcgggcgggcgaaatgggcatcatccccggcagcatgggggcg
aagtcttacatcgtgcgcggcttgggtaacgccgaaagcttttgcagttgcagccacggc
gcggggcgcgtgatgtcacggactgaagcgaaacgccgcgtgtcgctggatgagcataaa
cgcgccgtcgctggggtggaatgccggactgatgccagcgtgatcgacgaaacgccgtcg
gcttacaagccgattgaaaaggtgatggaagcgcagagtgatttggtggagattatgcat
acgttgaagcaggtgctgtgtgtgaaggggtga

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