KEGG   Thiothrix lacustris: RCF98_10805
Entry
RCF98_10805       CDS       T09396                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
tlc  Thiothrix lacustris
Pathway
tlc03030  DNA replication
tlc03410  Base excision repair
tlc03420  Nucleotide excision repair
tlc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tlc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RCF98_10805 (polA)
   03410 Base excision repair
    RCF98_10805 (polA)
   03420 Nucleotide excision repair
    RCF98_10805 (polA)
   03440 Homologous recombination
    RCF98_10805 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tlc03032]
    RCF98_10805 (polA)
   03400 DNA repair and recombination proteins [BR:tlc03400]
    RCF98_10805 (polA)
Enzymes [BR:tlc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RCF98_10805 (polA)
DNA replication proteins [BR:tlc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     RCF98_10805 (polA)
DNA repair and recombination proteins [BR:tlc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     RCF98_10805 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RCF98_10805 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 Sigma_reg_C hDGE_amylase
Other DBs
NCBI-ProteinID: WML89461
LinkDB
Position
2218398..2221160
AA seq 920 aa
MPNHTSKPLVLVDGSSYLFRAFHALPPLTNSHGEPTGAMHGVLNMLDKLRKDYDPEHMAV
IFDAPGKTFRDDMFPDYKANRPPMPDDLRGQIEPLLDIIKAQGYPLLIIPDVEADDVIGT
LAQEYAGKVIISTGDKDMAQLVDARVHLINTMSGLYSDPAGVVEKFGVAPERIRDYLTLI
GDTVDNVPGVNKVGPKTAVKWLAEYGSLENIMAHADEFKGKVGEYLREALAHLPLSYELV
TIKCDVALDCSPEALTFTPPDVDKLHALYERYEFRTRLAGLGKETPPNLPLSGEEQEGGA
SGSPPDKGELEGVSSAEGVSYQTILTQADLDTWLQRLQAAAEFAFDTETTSLDYMEAQIV
GVSFAINAGEAAYLPLAHDYLGAPPQLDRDATLAQLKPLLEDPALRKIGQNLKYDRSVLL
NHGIELRGIAHDTMLESYVLDSTANRHDMDTLCAKYLNHTNISFIDIAGKGKNQLTFNQI
ALEQATPYAAEDADMTLQLHQHFWPQLQALDAQRKLYEEVEVPLVSVLSSIERNGVKVDA
TMLAKQSKELETRMQEVVKQAYAAADQEFNLASPKQLGEILYTKLGLHAPRKTPKGQPST
AEDVLEELAAQGHELPTLILEHRGLAKLKSTYTDKLPEQINPRTGRVHTSYHQAVASTGR
LSSSDPNLQNIPIRTEEGRRIRQAFIADTGNKLLAADYSQIELRIMAHLSGDKGLLDAFA
HGLDVHRATAAEVFGTPLAEVSIEQRRAAKAINFGLIYGMSAFGLAKQLGVDRRDAQDYV
NLYFARYPGVKQYMDDTREQARAQGYVETLFGRRLFLPDIQSKNAATRQYAERTAINAPM
QGTAADIIKKAMIAVAAWLRDSGLQTRMIMQVHDELVFEVPEAELETVRAQVTALMTTAV
TLDVPLVVDSGVGDNWDEAH
NT seq 2763 nt   +upstreamnt  +downstreamnt
atgcctaatcacacctccaagccacttgtcctcgtcgacggttcttcctacctgttccgc
gcttttcatgcgctgccgccgctgaccaattcgcacggcgaacccaccggcgccatgcac
ggcgtgctcaatatgctcgacaagttgcgtaaggattacgaccccgaacacatggcggtg
attttcgatgcgccgggcaagaccttccgcgacgacatgttccccgactacaaggcgaat
cgcccgccgatgccggatgacttgcgtggtcagatcgaacccttgctggacattatcaag
gcgcaaggctacccgctgctgattatccccgacgtggaagccgacgatgtgatcggcaca
ctggcgcaggaatacgctggcaaagtgatcatttccaccggcgacaaggatatggcgcaa
ctggtcgacgcacgtgtccacctgatcaacaccatgagcggcctgtattccgacccggcg
ggcgtggtggaaaagtttggcgttgccccggaacgcatccgcgattacctcaccctgatc
ggcgacaccgtggataacgtgcccggcgtcaacaaggtcggccccaaaacagcggtgaag
tggctggctgaatacggctcgctggaaaacatcatggcacacgccgacgaattcaaaggc
aaagtcggcgaatacctgcgcgaagcactcgcacatttgccgctttcctacgaactggtg
acgatcaaatgcgacgtggcgctggactgttcgccggaagcgctgacgtttacgccgccg
gatgtggacaagctgcacgcgttgtatgagcgttatgaatttcggacgcgcttggcgggg
ttggggaaagaaacccctcccaacctccccttatcaggggaggagcaagaaggtggtgct
tccggttctccccctgataagggggagttagagggggtttcttccgccgaaggcgtttct
taccaaactatcctcacccaagccgacctcgacacctggctccaacgcctgcaagccgcc
gccgaattcgccttcgacaccgaaaccaccagcctcgattacatggaggcgcaaatcgtc
ggtgtctccttcgccatcaacgcgggtgaagcggcttacttgccgttggcgcacgattac
ctcggcgcaccaccgcagcttgaccgcgacgccacccttgcccaactcaagccgctgctg
gaagaccctgccttacgcaaaatcggtcagaatctgaaatacgaccgcagcgtgctgctc
aaccacggtattgaactgcgcggcattgcccacgacaccatgctcgaatcctatgtgctg
gattccaccgctaaccgtcacgacatggatacgttgtgcgcaaaatacctcaaccacacc
aacatcagtttcatcgacattgcaggcaagggcaaaaaccagctcacctttaaccagatt
gcgctggaacaggccaccccttacgccgccgaagatgccgatatgaccctacaactgcac
cagcatttctggccgcaattgcaagccctcgacgctcagcgcaagctgtatgaggaggtg
gaagtgccgctggtgagcgtgctgtccagcatcgaacgcaacggcgtgaaagtcgacgcc
accatgctcgccaaacagagcaaggaactggaaacgcggatgcaggaggtggtgaaacaa
gcctatgccgctgctgatcaggaattcaatctggcttcgcccaagcaattgggggaaatc
ctctacaccaaactcggcctgcacgcgccgcgcaaaacccccaaggggcagccttccacc
gctgaagatgtgctggaagaactggcagcgcaagggcatgaactgccgaccctgatcctt
gagcatcgcggtttggcgaaacttaaatccacctacaccgataaactgccggaacagatc
aacccgcgtaccgggcgggtgcatacctcctaccatcaggcggtggcgtcgaccgggcgg
ttgtcttccagcgatccgaatttgcagaacattccgattcgtactgaagaggggcggcgt
attcgtcaggcgttcatcgcggacacaggcaacaaactgctggcggcggactattcgcag
atcgaattgcgcattatggcgcacctttccggcgacaagggcttgctggatgcgtttgcg
catgggctggacgtgcatcgtgctaccgctgcggaagtgtttggcacgccattggctgaa
gtcagcatcgaacagcgccgcgccgccaaagcgatcaatttcgggctgatttacggcatg
tctgctttcggcctcgccaaacaactcggggttgatcggcgtgatgcgcaggattacgtc
aatctgtatttcgcacgctaccccggcgttaagcagtacatggacgacactcgcgaacag
gcgcgtgcacagggttacgtcgaaaccctgttcggccgccgcctgttcctgcccgacatc
cagtccaaaaacgccgccacccgccaatatgcggaacgcaccgctatcaacgcgccgatg
cagggcacggctgccgacattatcaagaaagccatgattgcggtggctgcgtggttacgt
gacagcggcctgcaaacccgcatgatcatgcaggtgcatgacgaactggtgtttgaagtg
ccggaagccgagctggagactgtgcgggcgcaagtcactgcactgatgacgacggcggtg
acgctggatgtgcctttggtggtggatagcggggtgggcgataactgggatgaggcgcat
taa

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