Thiothrix lacustris: RCF98_12450
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Entry
RCF98_12450 CDS
T09396
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RCF98_12450 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlc03021
]
RCF98_12450 (rpoA)
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_12450 (rpoA)
Enzymes [BR:
tlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RCF98_12450 (rpoA)
Transcription machinery [BR:
tlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RCF98_12450 (rpoA)
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RCF98_12450 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WML89778
LinkDB
All DBs
Position
2533552..2534556
Genome browser
AA seq
334 aa
AA seq
DB search
MTSKTTELLKPRNVHVQETGLNTYRITLEPLERGFGHTLGNALRRILLSSIPGSAVTEVQ
ITGVVHEYTSIEGVQEDVVEILLNLKNLAIRLNARDEATLTLKKKGKGVVTAADIERDHD
IEIINPDHVIAHITKDDTELEMSLTITRGRGYQPASVRRGPDSPELPLGTLVLDASYSPI
TRVAYNVDSARVEQRTDMDKLVLEIQTNGSVNAEESIGMAAQILQQQLAVFFDLRIEEPV
RREESQPEIDPILLRPVDDLELTVRSANCLKAENLFYIGDLVQRTETELLKTPNLGKKSL
TEIKDVLAQHGLTLGAKLDNWPPAGLDHRDSKVA
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgaaaacaacagaattactgaaaccgcgtaatgttcatgtgcaagagacaggt
ttaaacacctatcgcatcacacttgaaccgttagagcgtggttttggacacacactgggt
aatgctctgcgccgcattttactgtcttctattccaggcagtgcagtgacagaagtgcag
atcactggtgtggtacatgaatacaccagtatcgaaggtgtgcaagaagacgtagttgag
attcttttgaatctcaaaaatctggcgattcgtctcaatgctcgtgatgaagctaccctg
acccttaagaaaaaaggtaaaggcgttgtaacagcggcggacattgaacgtgatcatgat
attgagatcattaacccggatcatgttattgcgcacatcaccaaggacgacactgagctg
gaaatgagcctgacgatcactcgtggtcgtggctatcaaccagcttctgtacgccgtggc
cctgattcaccggaattgccattaggcactctggtgttagatgccagttatagcccaatc
acgcgtgttgcttacaacgtagacagcgcccgtgttgagcagcgtactgatatggacaag
ctggtgctggaaatccagactaatggttccgttaatgcggaagaatccattggtatggca
gcacagattctgcaacagcaattggccgtgttctttgatcttcgtattgaagagcctgtc
cgccgtgaagaatctcaaccagaaattgacccgattctgttgcgtccggttgacgatctg
gaactgactgtacgttcagcgaactgcctgaaagcagagaacctgttctacatcggtgat
cttgtgcaacgtactgagactgaattgctgaagacaccaaatctgggcaagaagtcctta
actgaaattaaagatgtgctggcacagcatggtctgacactgggtgctaagttggataac
tggccgccagcaggtcttgatcaccgtgacagcaaagtggcttaa
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