Thiothrix lacustris: RCF98_12515
Help
Entry
RCF98_12515 CDS
T09396
Symbol
ispA
Name
(GenBank) (2E,6E)-farnesyl diphosphate synthase
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc00900
Terpenoid backbone biosynthesis
tlc01100
Metabolic pathways
tlc01110
Biosynthesis of secondary metabolites
Module
tlc_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
RCF98_12515 (ispA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tlc01006
]
RCF98_12515 (ispA)
Enzymes [BR:
tlc01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
RCF98_12515 (ispA)
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
RCF98_12515 (ispA)
2.5.1.29 geranylgeranyl diphosphate synthase
RCF98_12515 (ispA)
Prenyltransferases [BR:
tlc01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
RCF98_12515 (ispA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
polyprenyl_synt
eIF3m_C_helix
Motif
Other DBs
NCBI-ProteinID:
WML89790
LinkDB
All DBs
Position
2543529..2544422
Genome browser
AA seq
297 aa
AA seq
DB search
MLNVRSRLQAWQERIESVLDEMLPPASTHPAKLHEALRYSVLDGGKRMRPLLVYATGEAL
GIAPEHLDVQAAAVELIHVYSLVHDDLPAMDDDDLRRGKPTCHKAFDEPTAILVGDALQA
LAFQMLATHPRMTASPAQRLRMIEQLGQAAGSRGMVGGQALDLAAVGQQLTEIELENMHI
HKTGALIRASVLLAAYSVEAIDVERLRQLDHFAKCIGLAFQVQDDILDVESDTQTLGKTR
GADIAAGKPTYPSIIGLSASKMKLQDLYDEALDALVSLGDSAHLLREIAEFTVKRIR
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgcttaatgtgcgtagccgtttgcaagcctggcaagaacgtatcgagtcagtgctggat
gagatgcttccccctgcttccactcaccccgccaagctgcatgaggccttgcgctattcg
gtgctggatggcggtaagcgaatgcgtccattgttggtgtatgcgacaggggaagccttg
ggcattgcgcctgagcatctagatgtacaggccgccgctgttgagctgatccatgtgtac
tctctggtgcatgacgatttgcctgcgatggatgatgatgatctgcgtcggggcaagccg
acctgtcataaggctttcgatgagccaaccgcgattttagtgggtgatgcattgcaagca
ttggcattccaaatgttggcgacacatccgcgcatgacggcttcaccagctcagcgttta
cgcatgattgaacaattggggcaggcggcgggttcgcgtggcatggtgggcggtcaggcg
cttgatctggcggcggttggacagcagttgacagaaattgagctggaaaacatgcacatt
cacaaaacgggagcattgatccgcgccagtgtgctgttagcggcgtatagtgtagaggcg
attgatgtggaacgtttgcggcaactggatcattttgccaaatgcattggtctggcattt
caggttcaggacgatattctggatgtggaaagcgatacccaaacactgggtaaaacccgt
ggagcggatattgcagcgggaaaacccacgtacccttcgatcattggcttgtccgcttcc
aagatgaaattacaggatttgtatgacgaggccttggatgctttggtatccttgggagat
tctgcccatttgctgcgtgaaattgccgagtttacggtcaagcgcataagataa
DBGET
integrated database retrieval system
