Thiothrix lacustris: RCF98_14220
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Entry
RCF98_14220 CDS
T09396
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03030
DNA replication
tlc03430
Mismatch repair
tlc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RCF98_14220 (dnaE)
03430 Mismatch repair
RCF98_14220 (dnaE)
03440 Homologous recombination
RCF98_14220 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlc03032
]
RCF98_14220 (dnaE)
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_14220 (dnaE)
Enzymes [BR:
tlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RCF98_14220 (dnaE)
DNA replication proteins [BR:
tlc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RCF98_14220 (dnaE)
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RCF98_14220 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
WML90118
UniProt:
A0ABY9MNL4
LinkDB
All DBs
Position
2910405..2913935
Genome browser
AA seq
1176 aa
AA seq
DB search
MTPFVHLRLHTEYSLVDSTIRIKPLMKAVEKIGMPAIAITDLNNFFGLVKFYKAAMGTGI
KPIFGVDVLLADEQGTDTLFHTILLCQNNTGYSNITKLISRAYQQGQVLGLPRVSREWIK
EFSEGVIMLSGGREGDVGQALLSGNQDLAEKRLQEWLATFPDRYYLELQRTGRDGEEDYI
HAAIDLALLHDIPVVATNDVRFTAESDFPSHEARVCIRDGYVLADPKRPKRYSPQQYLRT
PGEMVELFADIPSAISNTVEIAKRCNVSLTLGKNYLPQFPIPPGLTEAEYFCQVSEKGLE
ERLDFLYGEKFPRGTPGFAEKRKPYDERLKIELDVINEMGFPGYFLIVADFIQWAKDNGI
PVGPGRGSGAGSLVAYALKITDLDPLAYDLLFERFLNPERVSMPDFDIDFCMDGRDKVID
YVARTYGRNQVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFTIGITLSDALG
RTPKSEKDSELVSPDLIELYNSDEEVKSLLDLAISLEGLSRNTGKHAGGVLISPTDLTDF
TAICCEENGEGVVSQFDKNDVEDIGLVKFDFLGLRNLTIIDWALQTINRKQAAKGLPPVD
INRIPLDDKASFDLLKAQKTTAVFQLESRGMKDLIRRLQPDVFEDVVALVALFRPGPLQS
GMVDDFINRKKGIAKVEYPHPSLEQILKPTYGVIVYQEQVMQIAQVLAQYTLGGADMLRR
AMGKKKPEEMAKQRSIFMEGSRNNNVDESQAGYIFDLMEKFAEYGFNKSHSAAYALVAFQ
TAWLKAHHPAAFMAAVMSADMDNTEKVVTLLDDCRQLNLQVLPPDINRSEYQFTVDDKNR
IIYGLGAVKGAGEAALSVLVEERNKNGAFQSLADLCKRSGTQKVNRRVLETLIKSGAFDS
LGGTRRAMLEFLPEAMRMAEQYNRNQGTGQTDLFGGLFGNGVAESTPGTAMPVREEFPEK
ERLRLEKETLGLYLTGHPLDEYKEEIAGLGSRKKLADIAEDEATKYRREAVTLAGLVSSV
RTQHTDKGKRAFVQLDDNTAYYEVMIFTDTFAQFGHLLEKEACVVLEGTLDTDQRTGKTR
LKVEKVHNMQSVRENFLRKLLLKVDVSQVQQGVLENLRQCLQPAAAAGAFPIAVEYRNAE
AQSELRLAGSWTLPLDDAGLQGLRQMLGKENVSLVF
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaccccattcgtccacctccgtctccataccgaatattccttggtcgacagcaccatc
cgtatcaagccgctgatgaaagcggtcgaaaagattggaatgcccgcgattgccatcact
gacctcaataatttcttcgggctggtcaagttttacaaagccgcgatgggtacaggtatc
aagcccatcttcggcgttgatgtgttgttggcggacgaacaaggcactgacaccttgttc
cataccatcctgctatgccagaacaatactggctacagcaatattaccaaactgatctcc
cgcgcttatcagcaagggcaagtgctgggtttaccccgcgtctcccgtgagtggatcaag
gaattcagtgaaggcgtgatcatgctttccggcgggcgcgaaggcgacgtaggccaagcg
ctgctatctggcaaccaggatttggctgaaaaacgcctgcaagaatggctggcaacgttc
cccgaccgttattacctagagctgcaacgcaccgggcgcgatggcgaggaagattacatc
cacgcggcgattgatctggcgctgcttcacgacattccggtggtcgccaccaacgatgtg
cgctttaccgccgaatccgactttccgtcccacgaagcccgcgtctgtatccgcgacggc
tatgtgctggctgaccccaaacgccccaaacgttacagcccgcagcaatacttgcgtacc
ccgggtgaaatggtggaactgttcgccgacattcccagcgccatcagcaataccgttgaa
atcgccaaacgctgcaatgtttcactgacactgggtaaaaactacctgccacaattcccg
atcccgccgggtcttaccgaagccgaatatttctgccaagtcagcgaaaagggtttggaa
gagcgcctcgattttctctacggtgaaaaatttccgcgcggcacgccgggatttgcagaa
aagcgcaagccttacgatgaacgcctgaaaatcgaactcgatgttatcaacgaaatgggg
tttcccggttacttcctgatcgttgccgacttcatccagtgggcgaaagacaacggtatt
ccggtaggcccagggcggggttccggtgcgggttcactggtggcgtatgcgttgaaaatc
accgaccttgacccgttggcttacgatttactgtttgaacgtttcctcaaccctgaacgg
gtgtccatgcctgacttcgatatcgacttctgcatggatgggcgtgacaaagtgattgat
tacgtggccagaacttacgggcgtaatcaggtttcacagatcatcacctacggttcgatg
gcggcgaaagcggtggtgcgtgacgtggggcgggtgctggggcatccgtatggttttgtt
gaccgcattgccaagctgatcccattcaccattggcattaccttgtcagacgcgctgggg
cgtacccccaagtccgaaaaggattccgaactggtgtcccccgacctgatcgagttgtac
aacagcgatgaagaggtgaaatccctgctggacttggcaatctcgctggaaggtttgtcg
cgcaataccggcaaacacgcgggcggggtgttgatttcacccaccgatctgaccgatttc
accgcgatttgctgcgaagaaaacggcgaaggcgtggtgtcgcagtttgacaagaacgat
gtggaagacatcgggctggtcaaattcgactttttaggcttgcgtaacctcaccatcatt
gattgggcgctgcaaaccatcaaccgcaagcaggccgccaagggtttgccgccagtcgac
atcaaccgcattccgttggatgacaaggcttcgtttgacctgctcaaggcgcaaaaaacc
acggcggttttccagcttgaatcacgcggcatgaaagacctgattcgccgcctgcaaccg
gacgtgttcgaggacgtggtggcactggtcgcgctgttccgcccaggcccattgcagtcg
gggatggtggatgatttcatcaaccgtaaaaaaggcattgccaaggtcgaatacccgcat
cctagtctggagcaaatcctcaagccgacctacggggtaattgtttaccaagaacaggtc
atgcagattgcgcaagtcctcgcccagtacaccttgggcggtgcggacatgttgcgccgg
gcaatgggtaaaaagaaaccggaggaaatggccaagcagcgttccattttcatggaaggc
tcgcgcaacaataatgtcgatgaaagtcaggctggctatatatttgatttaatggagaaa
tttgcggaatatggttttaataaatcccatagtgccgcttatgcccttgttgccttccag
accgcttggctaaaagcacaccatccggcggcgttcatggctgccgttatgtcggcggat
atggataacaccgaaaaagtcgtgaccctgctggatgattgccgccaattaaatttgcag
gtgttgccgcccgacattaaccgttccgaatatcagttcacggtggatgacaagaaccgc
attatctacggccttggtgccgttaaaggcgcaggggaggcagcacttagcgtgctggtg
gaagagcgcaacaagaatggtgccttccagtcgctggctgatctgtgcaagcgttccggt
acgcaaaaggtgaaccggcgtgtgctggaaacgttgatcaagtccggcgctttcgacagc
ttgggcggaactcgccgcgccatgctcgaatttttgcccgaagcaatgcggatggcggaa
cagtacaaccgcaatcaaggcacggggcaaaccgatctgtttggtgggctgttcggtaac
ggtgtggcggaatcgacgccgggaaccgcgatgcccgtccgcgaggaattcccagaaaaa
gaacgtttacgtttagaaaaggaaacgttgggtttgtatctgaccgggcatccactggat
gagtataaggaagaaattgctggcttaggtagtcgcaaaaaattagcagatattgccgaa
gacgaggccacgaaataccgccgcgaagccgtcacgcttgccggattggtgagcagtgtg
cgtactcagcacacggataagggcaaacgcgccttcgtgcagcttgatgacaacacggct
tattacgaagtcatgatttttaccgacacctttgctcagttcggtcatttgttggaaaaa
gaagcctgcgtggtgttggaaggtacgctcgataccgatcagcgtaccggtaagacccgt
ttgaaggtagaaaaagtccacaatatgcagtcggtacgggaaaactttctgcgcaagctg
ttattgaaagtggatgtctcgcaagtccagcaaggtgtgctggagaatttgcgtcaatgt
ttgcaacctgctgccgcagcgggcgcgttcccgattgccgtggaataccgcaatgccgag
gcacaatcggaattgcgtctcgcgggaagttggacgttaccgctggatgatgcgggtttg
caggggctgcggcagatgctgggtaaggaaaatgtcagccttgtcttttaa
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