Thiothrix lacustris: RCF98_14235
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Entry
RCF98_14235 CDS
T09396
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc00220
Arginine biosynthesis
tlc00240
Pyrimidine metabolism
tlc00250
Alanine, aspartate and glutamate metabolism
tlc01100
Metabolic pathways
tlc01110
Biosynthesis of secondary metabolites
tlc01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
RCF98_14235 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
RCF98_14235 (carB)
00220 Arginine biosynthesis
RCF98_14235 (carB)
Enzymes [BR:
tlc01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
RCF98_14235 (carB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
ATP-grasp
Dala_Dala_lig_C
ATPgrasp_Ter
ATP-grasp_5
ATP-grasp_3
ATP-grasp_4
RimK
ATP-grasp_2
Usp
Motif
Other DBs
NCBI-ProteinID:
WML90121
UniProt:
A0ABY9MQM0
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All DBs
Position
2916359..2919589
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AA seq
1076 aa
AA seq
DB search
MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM
ADAIYIEPIRWETVARIIEKERPDALLPTMGGQTALNCALDLSRHGVLEKFGVDMIGANE
VSIDMAEDRQKFKVAMDEIGLESARSGVAHSMDEARAVQATLGFPVVIRPSFTMGGSGGG
IAYNKQEFETIVARGLDLSPTTEVLLEESLLGWKEYEMEVVRDRNDNCIIICSIENLDPM
GIHTGDSITVAPAQTLTDKEYQLLRNASLAVLRKIGVDTGGSNVQFSVNPDNGRIIVIEM
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELRNEITGGATPASFEPSIDYVVTKIP
RFTFEKFPQADARLTTQMKSVGEVMAMGRTFQESFQKALRGLETGIDGLSERVDPQDPDA
KDILRRQMTEASAERILYVADAFRFGMTLEEVFSLTSIDMWFLVQLKELVDLENDLKERI
LNDLSADEMRALKRKGFSDRRLATLTHETEKSVRAARHKLNVRPVYKRVDTCAAEFSTNT
AYMYSTYEEECESNPTNNKKIMVLGGGPNRIGQGIEFDYCCVHAALALRDDGFETIMVNC
NPETVSTDYDTSDRLYFEPLTLEDVMEIVDLEKPYGVIVQYGGQTPLKLARDLEALGAPI
IGTSPDSIDLAEDRERFQQLINKLGLKQPPNRTARSIDEAVRLADEIGYPLVVRPSYVLG
GRAMEIVYHENELRRYMTTAVSVSNDSPVLLDRYLDDAIEVDVDAICDGENVLIGGIMQH
IEQAGIHSGDSACSLPPYSLRADIQDQLREQMVLMGKALNVIGLMNAQFAIKGDDVYVLE
VNPRASRTVPFVSKAIGRPLAKIAARCMAGQSLASQNALNEIIPSYYAVKEAVFPFIKFP
GVDPILSPEMKSTGEVMGVGRTFAEAFGKAQYAAGEHYPTSGVAFISVREADRRHLQEVG
SMLAGQGFKIVATRGTARELQNVGVACEIVNKMREGRPNIVDMIKNEEIDLIVNTTEGEQ
STRDSFEIRREALQHKITYTTTIEGARALCKAMAYTDSEQVYCLQDLHQEITQQGV
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaacggacagacattaaaagcatcctaattattggtgcaggcccgatcattatc
ggtcaggcgtgcgaattcgactattccggtgcgcaagcgtgtaaggcgctacgtgaggaa
ggctaccgcgtcattttggtcaattctaaccccgcgaccattatgaccgatcctgaaatg
gcggatgcgatttacatcgaaccgatccgctgggaaacggttgccagaatcattgaaaaa
gaacgccctgacgcgctattgccaaccatgggtggacaaaccgcgcttaactgcgccctc
gacctttcccgccacggcgtgctggaaaagttcggtgtagacatgatcggtgccaacgaa
gtgtccatcgacatggccgaagaccgccagaaattcaaagtggctatggatgaaatcggc
cttgaatccgcgcgttccggcgtagcgcattcgatggacgaagcccgcgcagtgcaagcc
acgctgggtttcccggtggttatccgtccgtccttcacgatgggtggcagtggcggcggt
atcgcttataacaagcaggaatttgaaaccatcgtggctcgcgggctggatttatccccg
accactgaagtgttgttggaagaatccctgttaggttggaaagagtatgaaatggaagtc
gtgcgtgaccgcaatgacaactgcatcattatctgttccatcgaaaaccttgacccgatg
ggtatccataccggcgactcgattaccgtagcgcctgcacaaaccctgactgacaaggaa
taccagttgctgcggaatgcgtcactggcggtgctgcgcaaaatcggcgtggacacgggc
ggttccaacgtacagttctcggtcaacccggacaacgggcgcattatcgttatcgaaatg
aacccgcgtgtgtcgcgctcttccgcgctggcttccaaagcgaccggtttcccgattgcc
aaagtcgcagcgaaactggcggtcggctacacgctggatgaattgcgtaacgaaattacc
ggcggcgcaactccggcatcgttcgagccatccatcgactacgtcgtcaccaaaattcca
cgctttaccttcgagaaattcccgcaggcggatgcgcgtttgaccacgcaaatgaagtcg
gtcggcgaagtcatggcgatggggcgcaccttccaagaatcgttccagaaagccctgcgc
ggtctggaaaccggcattgacggcctgagtgagcgtgttgacccgcaagaccctgatgcg
aaagacatcctgcgtcgccaaatgaccgaagccagcgccgaacgtattttgtacgtggca
gatgctttccgttttggcatgacactcgaagaagtgttcagtctgaccagcatcgacatg
tggttcctggtgcaactcaaggaactggtcgatctcgaaaatgatttgaaagaacgtatt
ctcaacgatctcagcgccgatgaaatgcgggcattgaagcgcaaaggcttctctgaccgt
cgtctggcgaccctgacccacgaaaccgaaaagtcggtgcgtgcggcgcgtcataagttg
aatgtacgcccggtctacaaacgcgtggacacttgcgcggcggaattttccaccaatacc
gcgtacatgtattccacttacgaggaagagtgcgaatccaacccgaccaacaataaaaag
atcatggtcttgggcggcggtccgaaccgaatcggtcagggtattgagttcgactactgc
tgcgtccatgcggcgttggccttgcgtgacgacggctttgaaaccatcatggttaactgt
aacccggaaacggtttctaccgactatgatacctccgaccgtctgtatttcgagccgctg
acgctcgaagacgtgatggaaatcgttgatctggaaaagccttacggcgtgatcgtgcaa
tacggtgggcaaaccccgctgaaactggcgcgtgaccttgaagccttgggtgcgccgatc
attggtacatcgcccgattcgatcgacttggcggaagaccgtgaacgcttccagcaattg
atcaataaactcggcctcaagcagccgcctaaccgtaccgcgagaagtattgacgaagca
gtacgtttggcagacgaaattggctacccgttggtggtgcgcccgtcttacgtattgggt
gggcgtgcgatggaaatcgtttaccacgaaaacgaattgcgccgctacatgaccacggct
gtatccgtttccaacgattccccggtattgctcgaccgttatctggatgacgcgattgaa
gtcgacgtggacgcgatttgcgatggcgaaaacgtgctgatcggcggcattatgcagcat
attgaacaagcgggtatccactccggtgactcagcgtgttccttgccgccgtattccttg
cgtgccgacattcaggatcaattgcgcgagcaaatggtgctgatgggcaaagctctcaac
gttatcggcctgatgaacgcgcaatttgcgatcaaaggcgacgatgtgtatgtgttggaa
gtgaacccacgtgcttcacgtaccgtgccgttcgtgtccaaagccattggtcgtccgttg
gcaaaaatcgcagcacgttgcatggcaggccagagtttggctagccagaatgccttgaac
gaaatcattccgtcctactacgcggtgaaagaagcggtattcccgttcatcaagttcccc
ggtgttgacccgattcttagcccggaaatgaaatccaccggcgaagtcatgggcgtgggc
agaacctttgccgaagctttcggtaaggcacaatacgcggctggcgaacattacccaact
tctggcgtggccttcatcagtgtgcgcgaagctgaccgtcgccatttgcaggaagtgggc
agcatgttggccgggcagggcttcaagattgtggctacccgtggcacggcccgcgaattg
caaaacgtcggtgtggcgtgtgaaatcgtcaacaagatgcgtgaaggccgccccaatatc
gtggatatgatcaaaaacgaagaaatcgacctgattgtgaacaccaccgaaggtgaacaa
tcgacgcgtgactcgttcgagatccgccgcgaagccttgcagcacaagattacctacacc
accacgattgaaggtgcgcgggcattgtgcaaggcgatggcctacactgacagtgagcaa
gtctactgcttacaggatttacatcaggaaataacacaacaaggggtttga
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