Thiothrix lacustris: RCF98_14710
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Entry
RCF98_14710 CDS
T09396
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
tlc
Thiothrix lacustris
Pathway
tlc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RCF98_14710 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_14710 (uvrB)
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RCF98_14710 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RCF98_14710 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
Kinesin
UB2H
DUF87
PMT2_N
AAA_30
AAA_22
Microtub_bd
DUF1833
Motif
Other DBs
NCBI-ProteinID:
WML90208
UniProt:
A0ABY9MNV1
LinkDB
All DBs
Position
complement(3006033..3008057)
Genome browser
AA seq
674 aa
AA seq
DB search
MTEPNTFQLHTDYQPAGDQPEAIRSLVNGLHDGLLHQTLLGVTGSGKTFTMANIIQQTQR
PAIILVHNKTLAAQLYGEMKEFFPNNSVEYFVSYFDYYQPEAYVPSKDVYIEKDSAINDH
IEQMRLSATRNLFERKDVIIIATVSSIYGLGDPESYLKMLLILVRGDRIDQRTLLRRLAE
MQYSRNDLDLQRGTFRVRGEIIDIHPAESDKEAIRIELFDDEIENLSYFDPLTGEVLRRV
PRLTVYPKTHYVTPREVLLAAIDYIKAELKERLTVLRENDRLVEAQRLEQRTQYDIEMIV
ETGYCSGIENYSRYLSKRPAGEPPPCLFDYLPRNAIVFIDEAHVTIPQFGGMYKGDYSRK
STLVDYGFRLPSALDNRPLRFDEFEKLIPQAIHVSATPGTYELEHSDNIAEQVVRPTGLV
DPLVEVRPILSQVDNVMSEISERAQRNERVLVTTLTKRMAEDLTDYLMEHNIKVRYLHSD
IDTVERVEIIRDLRKGEFDALVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNAEGKAILYADKITDSMRKAMDETSRRRTKQLAHNEQHGITPQTIRKRIADVMEG
AYANASKGKGKTRGEKKVAEEAAEYRSLTPDQALKQIKKLEEKMFQHAKNLEFEQAALVR
DQLAHLRARVFGLE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaccgaacacttttcagctccacaccgactaccagcccgctggcgatcagccg
gaagcgatccgttcactcgtcaatggcctgcatgatggcttattacaccaaaccttgctg
ggcgttaccgggtcgggcaaaaccttcacgatggcaaacatcatccagcaaacccagcgt
ccggcaattattctggtgcacaataaaacgctggcggcacaactttacggcgagatgaag
gaattttttccgaataattcagtggaatatttcgtttcctacttcgattactaccagcca
gaagcctatgtgccgtccaaagacgtgtacatcgaaaaagattccgccattaacgaccac
atcgaacagatgcgcctttctgccacccgcaacctgttcgagcgcaaagatgtcatcatt
atcgccaccgtttcgtcgatttacggcctcggcgaccccgaatcgtatttgaaaatgctg
ctgattctggtgcgtggcgaccgcatcgaccagcgcaccctgttacgccgactcgcggaa
atgcaatacagccgcaacgaccttgacctgcaacgcggcacatttcgggtacgtggcgaa
atcatcgacatccacccagcggaatccgacaaggaagccatccgcatcgaactgttcgat
gacgaaatcgaaaacctcagctatttcgacccactgaccggcgaagtgctacgccgtgtg
ccgcgcctcacggtttacccgaaaacgcactatgtcaccccgcgagaggtgttgttggct
gccatcgactacatcaaggccgaactcaaggaacgcctcaccgtcttgcgcgaaaacgac
cggctggtagaagcgcaacgtctcgaacagcgcacccagtacgacatcgaaatgatcgtc
gaaaccggctactgttccggcatcgaaaactattcgcgctacctgtcgaaacgcccggca
ggggaaccaccaccctgtttattcgactacttaccgcgcaatgccatcgtgttcatcgac
gaagcgcacgtcaccattccacaattcggcggcatgtacaaaggcgattattcccgtaaa
agcacactggtggattacggtttccgcctgccctcggcactcgacaaccgcccgctgcgc
tttgacgaattcgagaaactgattccgcaagccatccacgtttccgccacgcccggcacc
tatgagctggagcattccgacaatatcgccgaacaggtggtgcgcccgaccgggttagtt
gacccgctagtcgaagtacgccctatcctctcgcaagtcgacaacgtgatgtccgaaatc
agcgaacgtgcccagcgcaatgagcgcgtgctggtcaccacgctgaccaaacgcatggcg
gaagacctcaccgattacctgatggaacacaatatcaaggtacgttacctgcattctgac
atcgacacggtggagcgcgttgaaatcatccgcgacctgcgcaagggcgaattcgatgcg
ctagttggcattaacttgctacgggaagggcttgatataccagaagtgtcattggtagcg
attctggatgctgacaaggaaggtttcctgcgttctgagcgctccctgatccagaccatc
gggcgggcagcacgcaatgcagaaggcaaagccatcctctacgctgacaaaatcactgat
tccatgcgcaaagcaatggacgaaaccagccgtcgccgcaccaagcagcttgcccacaat
gaacaacacggcattaccccgcaaaccatccgcaagcgcattgccgacgtgatggaaggc
gcttacgccaatgccagcaagggcaaagggaaaacacgtggggaaaagaaagttgccgag
gaagcggcagaataccgcagcctaacgcccgaccaggcgctcaagcaaatcaagaagctg
gaagaaaagatgttccagcacgccaagaatctggaatttgaacaggccgccttagtccgc
gatcagcttgcccacctccgcgcccgtgtgttcggcctagagtaa
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