Thiothrix lacustris: RCF98_14975
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Entry
RCF98_14975 CDS
T09396
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
tlc
Thiothrix lacustris
Pathway
tlc02020
Two-component system
tlc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RCF98_14975
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RCF98_14975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlc03021
]
RCF98_14975
Transcription machinery [BR:
tlc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RCF98_14975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Motif
Other DBs
NCBI-ProteinID:
WML90261
LinkDB
All DBs
Position
complement(3061478..3062971)
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AA seq
497 aa
AA seq
DB search
MLKQGFDLKLGQTLSMTPQLQQAIRLLQLSSLELQNEIQQALEDNPLLQLADEADDSRPE
IPNEPLAEATTNTTELSDTESSAEASNDHSQLDQDIPDELHMDAEWEDIYDTRSSNSDGN
GDANGFLENQGDTADSGLQEHLLWQIRMSNLTSIDKQIAEVLIGSLDDAGYLCDPLEEIF
EDLRNDLLIDIEDVEVVLKFIQQLDPVGVGARDLRECLLIQLAHLPESRILFKARQLVEK
NLDLMERRDYKEISKRLKIEQGELEEIILLLRSLQPRPGSAYSASSADYIVPDAYVRKIK
GEWVVSLNAQVTPHLQVNQYYADMLGQAKSEHDASYFKSNLQQARWLIRSVESRNTTMLN
VAKAIVERQSAFMQYGEQAMKPLILRDIAEELEMHESTISRVTTNKYLYTPRGIFEFKYF
FSSQVDTDTGSSCSSTAIRAMLKKLINEEDQHLPLSDNQLTNLLNQQGINVARRTVAKYR
EAMSIPSSHDRKTLVPT
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgctcaaacagggatttgatctcaaacttggccagacactctcgatgacgccacaatta
caacaggccattcgcttgttgcaattatcgtcactggagttacagaacgaaattcagcaa
gcactggaagacaatcctttgctgcaacttgccgatgaagccgatgactcgcgccctgaa
atacccaacgagccgctcgccgaagccaccaccaatactaccgagctatccgacacggaa
tcttccgcagaggcatctaacgaccattcccagcttgatcaggacattcccgacgaactg
cacatggatgccgaatgggaagacatttacgatacgcgcagcagcaacagtgacggcaac
ggcgatgcgaatggcttcttagaaaatcaaggagataccgccgatagtggcttgcaggaa
cacctgctatggcaaattcgcatgagcaacctgaccagcatcgacaagcaaattgcggaa
gtgctgataggctcgctcgatgatgccggttacttgtgcgacccgctcgaagaaatcttt
gaagacctccgcaacgacctgctgattgacattgaagacgtcgaagttgtcctcaaattt
atccagcaactcgacccggtaggcgtaggtgcacgcgacttacgtgaatgcctattgatc
cagttggcgcaccttccagaaagccgcattctcttcaaggctcgccagctcgtcgaaaaa
aatctggacttgatggagcggcgcgactataaagaaataagcaaaaggttgaaaatagaa
cagggagaactcgaagagatcatcttgttgttacgcagccttcaaccacgaccgggtagt
gcttattcagcatccagtgccgattacatcgtgcctgatgcctatgtccgcaagatcaaa
ggagaatgggtggtttcactgaacgcgcaagtcacaccacacctgcaagtcaatcagtat
tacgctgacatgctgggacaggccaaaagtgagcatgatgccagctacttcaaatccaat
ttgcaacaagcccgctggctgatccgcagcgtggaaagccgcaataccaccatgctgaat
gttgccaaagcaatagttgaacgtcaaagcgctttcatgcaatatggtgagcaggcaatg
aagccattgattctcagggatatagcagaagagcttgaaatgcacgagtccaccatctcc
cgcgtcaccaccaacaaatacctgtataccccacgcggtatctttgaattcaaatatttc
ttctccagtcaagtcgatactgatacgggatctagctgctcttcgacggccattcgtgcc
atgctcaaaaaactcattaatgaagaagaccagcacttacccctaagcgacaaccaattg
accaacctgctcaaccagcagggtattaatgtagcgcgacgcactgtcgctaagtatcgt
gaagcaatgtcgattccgtcatcacatgatcggaagacattggttccgacctga
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