Thiothrix lacustris: RCF98_15075
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Entry
RCF98_15075 CDS
T09396
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RCF98_15075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlc03400
]
RCF98_15075
Enzymes [BR:
tlc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RCF98_15075
DNA repair and recombination proteins [BR:
tlc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RCF98_15075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
WML90279
LinkDB
All DBs
Position
3084071..3084805
Genome browser
AA seq
244 aa
AA seq
DB search
MDAQVRNRYMQAMGIPVWMPKDSRVQEEVGEVQEVVPDIKRPPPSPIPVSFDCSYMDWQQ
LRTAVQSCARCDISKTRTQTVFGAGNQQAPWMVIGEAPGAEEDRQGEPFVGKAGQLLNNM
LLAIGMPRETVYIANVLKCRPPNNRDPKPDEAANCRGYLERQIELVNPSLILVVGRIAAQ
NLLQTTEPLARLRLKQHLAPLSGKPVVVTYHPAYLLRQPADKRKAWQDLLFAREVFSQYA
STPH
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtggatgcgcaggtacgcaatcgctacatgcaggcaatgggaatcccggtgtggatgcca
aaagatagtagggtgcaggaagaggtgggggaggtgcaggaggttgtccctgacataaaa
cggcctcctccctcgccaatacctgtttctttcgactgttcctacatggactggcagcaa
ctccgcaccgccgtccaatcctgtgcccgttgcgacatcagcaaaacccgtacccagacc
gtgttcggtgcgggtaatcagcaagcaccttggatggtaattggtgaagcccccggtgcg
gaagaagaccgccaaggcgagcctttcgtcggcaaggctgggcagttgctcaacaatatg
ctgttggcgattgggatgccccgtgaaacggtttacatcgctaatgtccttaaatgccga
ccgcccaataatcgcgatccgaagccagatgaggctgccaattgccgagggtatttggag
cgccagattgaattagtgaacccatcgctgattttggtggtaggccgcattgctgcccaa
aacctgttgcagacgactgagccgctagcgcgtttacgcctcaagcaacatcttgctccc
ttgagtggtaagccagttgttgtgacttatcaccctgcttacctgttgcgtcagcctgct
gacaaacgcaaggcgtggcaggatttattatttgctcgtgaagtttttagtcaatatgcc
tcaacaccgcactga
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integrated database retrieval system
