Thiothrix lacustris: RCF98_15440
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Entry
RCF98_15440 CDS
T09396
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tlc
Thiothrix lacustris
Pathway
tlc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RCF98_15440 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlc03019
]
RCF98_15440 (pnp)
03016 Transfer RNA biogenesis [BR:
tlc03016
]
RCF98_15440 (pnp)
Enzymes [BR:
tlc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RCF98_15440 (pnp)
Messenger RNA biogenesis [BR:
tlc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RCF98_15440 (pnp)
Transfer RNA biogenesis [BR:
tlc03016
]
Prokaryotic type
tRNA degradation factors
RCF98_15440 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
Alpha_E1_glycop
Motif
Other DBs
NCBI-ProteinID:
WML90351
UniProt:
A0ABY9MQ41
LinkDB
All DBs
Position
3169565..3171658
Genome browser
AA seq
697 aa
AA seq
DB search
MAKITKTFQYGNNTVTIETGEIAKQATAAVMITMDDTSVLVTVVGSKETVPGRDFFPMTV
DYQEKFYAAGRIPGGFFKREARATEDETLVARLIDRPLRPLFPEGFTHEVQLIATVVSMN
PAVSADIPALLGASAVMALSGMPFQGPIGAARVGYRDGGYLLNPSKEELLTSDLDLVIAG
TESAVLMVESEAKELSEEVMLGAVMFGHEQMQVAINAIKELAAEVATPAWDWSAPVTNLA
LADAVEAACSADLVEAFQIADKQARYARIHEVQSALVEKLAGKEGAEGFSADEIKGEFKN
AEKKVVRGTILDGKPRIDGRALDAVRQITVRVGVLPRAHGSALFTRGETQALVVTTLGTE
RDAQVIDAITGEYKDNFLFNYNFPPYSVGETGRFGSPKRREIGHGRLAKRGVKAMVPSTD
DFPYTIRCVSEITESNGSSSMASVCGSSLAMMDAGVPLKAPVAGIAMGLIKEGERFAVLS
DILGDEDHLGDMDFKVAGSSDGITALQMDIKITGITKDIMQQALVQAKAGRLYILGEMAK
GLEAPRDEVSEFAPRYVTMKINPDKIREVIGKGGETIRGITAATGASVDINDEGFIKIAA
IDAKAAYEARSMIEAITAEVELDKVYTGKVVRLMDFGAFVTILPGKDGLLHISQISNDRV
EKVTDFVNEGDIVKVKVIEIDRQGRMRLSMKAVGEGE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaatcaccaagactttccaatacggtaataataccgtcactatcgaaactggc
gaaatcgccaagcaagctaccgccgccgtcatgattaccatggacgacaccagtgttcta
gttaccgtcgttggcagcaaagaaaccgttccgggtcgtgatttcttccccatgacggtg
gattatcaagaaaaattctacgcagcaggccgcattcctggtggtttcttcaagcgcgaa
gcgcgtgccactgaagatgaaacattggttgcccgtctgatcgaccgccctttgcgccca
ctgttcccagaaggcttcacgcacgaagtgcaattgattgcgacggtggtttccatgaac
ccggcggtcagcgctgatattccagcattgctgggtgcttctgcggtgatggcgttgtct
ggtatgccattccaaggccctatcggtgcagcacgggttggctaccgtgatggtggctat
ttgcttaacccatccaaagaagagctgctcacatctgatttggatctggtgattgcgggt
actgaatctgcggtgctgatggttgaatctgaagcgaaagagctgagcgaagaggttatg
ctgggcgcggtcatgttcggtcacgaacaaatgcaagttgctatcaatgctattaaagaa
ctggcggcagaagtcgccactccggcgtgggactggtctgctcctgtcacgaaccttgca
ttggcagatgcggttgaagcggcttgttctgctgatctggttgaagctttccagattgct
gacaagcaagcgcgttatgcccgtattcatgaagtgcagagtgcactggttgaaaagctg
gcagggaaagaaggcgcagagggtttcagcgctgacgagatcaaaggcgaattcaaaaac
gctgagaagaaagtcgtgcgcggtactatccttgatggtaagccacgtattgatggccgt
gcccttgacgcagtacgtcaaattactgttcgcgttggcgtattgccacgtgcacacggt
tccgcactgttcacccgtggtgaaacacaagcactggttgtcaccacgctgggtacagaa
cgtgatgcacaggtcattgacgcgattacgggtgaatacaaggataacttcctgttcaac
tacaacttcccgccgtacagcgtaggcgaaaccgggcgttttggttcaccgaagcgtcgt
gaaatcggtcatggtcgtttggctaaacgtggtgtgaaggcgatggtgccaagcactgac
gatttcccttacaccatccgttgcgtgtctgaaatcactgaatccaatggttccagctcc
atggcgagtgtgtgcggcagttcattggcaatgatggatgcaggcgtaccgttgaaagca
ccggttgcgggtatcgcgatgggtctgatcaaggaaggcgagcgctttgctgttctgtcc
gacatccttggtgatgaagatcacctcggtgatatggactttaaagtagccggttcttcc
gacggtattaccgcgctgcaaatggacatcaagatcacgggtattaccaaggacatcatg
cagcaagctctggtacaagccaaagcaggccgtttgtatatcctcggtgaaatggctaaa
ggtctggaagcgccacgtgacgaagtgtccgaatttgcaccacgttacgtcaccatgaag
atcaacccggacaaaatccgcgaagttatcggtaaaggtggcgaaaccatccgtggcatt
actgctgcaacgggcgcaagtgttgacatcaatgacgaaggtttcatcaaaatcgcagcc
attgacgcgaaagcagcctatgaagcgcgtagcatgatcgaggcgatcactgctgaagtc
gagctggacaaagtttacacgggtaaagtggtgcgtttgatggacttcggtgcattcgtg
accatcctgccgggtaaagacggtctgttgcacatttcccagatcagcaatgaccgtgtg
gaaaaagttacggatttcgtgaatgaaggcgatatcgtcaaagttaaagtcatcgaaatc
gaccgtcagggtcggatgcgtttgagcatgaaagcagtgggcgaaggcgagtaa
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