Thiomicrorhabdus lithotrophica: NR989_00865
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Entry
NR989_00865 CDS
T09486
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tlh
Thiomicrorhabdus lithotrophica
Pathway
tlh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NR989_00865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlh03019
]
NR989_00865
03009 Ribosome biogenesis [BR:
tlh03009
]
NR989_00865
Enzymes [BR:
tlh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NR989_00865
Messenger RNA biogenesis [BR:
tlh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NR989_00865
Ribosome biogenesis [BR:
tlh03009
]
Prokaryotic type
rRNA helicases
NR989_00865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Flavi_DEAD
DUF6702
UvrA_inter
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WEJ62827
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All DBs
Position
complement(218186..219994)
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AA seq
602 aa
AA seq
DB search
MTVDVTFKDLNLKPEVLQAITDIGYETPSPIQAQAIPALMTGNDILGMAQTGTGKTAAFA
LPALSQADIKQKNPQILVLAPTRELAIQVAEAFQGFAHHMKGFHVLPIYGGSDYGTQIRA
LNRGVHVVVGTPGRVMDHIRKGTLKLDTLKLLVLDEADEMLRMGFIDDVEWILQQTPKTR
QIALFSATMPKEVHRIASNYLNNPTEVIIKQKTATATTIEQKYLLVSGGHKLDALTRILE
AEENMDASIIFVRTKTATVDLAERLEARGYAAAALNGDIAQNQRERIVDQLKKGKLDILV
ATDVVARGLDVPRISHVFNYDIPQDNESYVHRIGRTGRAGRSGTAVLFVTPRERRLLSSI
ERTTKSKIPEMHLPSTQDINDSRVDKFKSRIIEATQLEDTAFYQEMIEQIETEKNIPAVE
IAAGLARLLQGDIPFFMSDKPIREPRAERNAGSNDRGGRNERGGRGDRGGRGDRPERKPR
RQRSATPDEGMTRFRIEVGNQHGVRPGNIVGCIANEAGLDSEFIRQLNIEDTFSTVDLPS
DMPKAAKEDLSKAWVCGQQLKIREVTAGGGSGEPRKRLSRNKPAGGGAGKDKGKPRRAPK
RS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactgttgatgtaacattcaaagatttaaatttaaaaccagaagtacttcaggctatc
actgatattggttacgaaactccttcaccaatccaggctcaagctattccagcattaatg
actggtaatgatattttaggtatggctcaaacgggtacaggtaaaacggctgcttttgca
ttaccggcactatcacaagccgatatcaaacaaaaaaatccacaaatattggtattagca
ccaacacgcgaacttgctattcaggttgctgaagcattccaaggttttgctcaccacatg
aaaggtttccatgttctacctatttatggtggttcagactacggaacacagattcgcgcc
ttaaaccgtggtgttcacgttgtagtgggtacgcctggtcgagttatggaccatatccgt
aaaggaacattaaaactagacacattaaagcttcttgtattagatgaagccgatgaaatg
ctacgcatgggattcattgatgatgttgagtggattcttcaacaaacacctaagactcgt
caaattgcactattttcagcaacaatgcctaaagaagttcaccgcattgcttctaactac
cttaataatccaactgaagttattattaagcagaaaacagcaacagcaaccactattgaa
cagaagtacctgttagtaagtggcggacacaaactagatgcgctaacgcgtattttagaa
gctgaagaaaacatggatgcttcaattatcttcgtgcgcactaaaacagcgaccgttgat
cttgcagaacgtttagaagcacgtggttatgctgctgctgcacttaacggcgatattgca
cagaaccaacgcgagcgtattgttgaccaacttaaaaaaggcaagctagacatcctagta
gcaacagacgttgttgcacgtggtttagatgttccacgtattagccatgtatttaactat
gatattccacaggataacgaatcttatgttcaccgtattggtcgtacaggccgtgctgga
cgttctggtactgcagtactattcgttacaccacgtgagcgtcgtcttttaagctcaatt
gaaagaacaactaagagcaagattcctgaaatgcacttgccttctacgcaagacattaac
gacagccgtgtagataagtttaaatctcgcatcatcgaagcaacgcaacttgaagatacg
gctttctatcaagagatgattgaacagattgaaactgagaagaatattcctgctgtagaa
attgcggctggtttagcacgcttacttcaaggtgatattcctttctttatgtctgacaag
ccaattcgtgaacctcgtgcagaacgcaatgcaggatcaaatgatcgcggtgggcgaaat
gaacgtggtggtcgcggagatagaggtggccgtggtgaccgtccagaacgcaaaccacgt
cgccaacgttcagcaacacctgatgaaggtatgacacgtttccgcattgaagtgggtaat
caacatggtgttcgtcctggtaacatcgttggttgtattgctaacgaggccggactagac
agtgaatttattcgtcagttaaacattgaagatacgttcagtactgttgatttaccttct
gacatgcctaaagctgctaaagaagatctaagcaaagcatgggtttgtggtcaacagctt
aaaattcgtgaagtcactgctggcggtggttctggtgaacctcgcaagcgtctatctcgt
aataagccagctggcggcggagcaggtaaagacaaaggtaaaccacgccgtgctccaaaa
cgcagttaa
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