Thiomicrorhabdus lithotrophica: NR989_01295
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Entry
NR989_01295 CDS
T09486
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tlh
Thiomicrorhabdus lithotrophica
Brite
KEGG Orthology (KO) [BR:
tlh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlh03032
]
NR989_01295 (topA)
03400 DNA repair and recombination proteins [BR:
tlh03400
]
NR989_01295 (topA)
Enzymes [BR:
tlh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NR989_01295 (topA)
DNA replication proteins [BR:
tlh03032
]
Prokaryotic type
DNA Topoisomerases
NR989_01295 (topA)
DNA repair and recombination proteins [BR:
tlh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NR989_01295 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Extensin_1
Poly_export
Toprim_2
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
WEJ62909
LinkDB
All DBs
Position
313460..315994
Genome browser
AA seq
844 aa
AA seq
DB search
MTNLVIVESPAKAKTIEKYLGKDFTVRSSYGHIRDIQKKGMGIDLENGFLPNYEISSDKK
KNVTELKKLAKASDTIWLATDEDREGEAIAWHLAEALNLDIKTTKRIVFHEITKPAIQAA
IANPRTVDLDLVDAQQARRILDRIVGFELSPILWKKIRTGLSAGRVQSVAVRLIVEREKE
VEAFESNFVFRVQGQLKLLDKSGNPVGDLDVKRTATFATEEEATAFLEAVAKANLSVVSL
EEKPAKRTPKAPFTTSTLQQEASSKLGFSVKQTMMVAQRLYESGKITYMRTDSVNLSELA
IAQAKETITSEYGAKYSESRRYKTKNADAQEAHEAIRPTDFGVENVTGERNEQRLYQLIW
RRAIASQMADAQLKRTTVDVGIDLLPDDKLTAKGEVVIFDGFLKVYDFDAKDGSGLLPPM
TIGQALSVTELGAKQSYSRPPARYNEASLVRTLEEMGIGRPSTYAPTIDTVQQRGYVIKE
DREGKPRDYRQITLVDGKVSAETLSEMAGTEKNKLFPTDIAGIVTNFLTKHFGDILDYQF
TAKVEGKFDVIAEGKMQWQDMLSEFYTQFHPRVVAAEDVSREEAGQARSLGNHPESGKPM
FVKIGRYGPYVQVGDGENEEKPTFASLMPGQKMDLLTLEQALDLFKLPREVGEMPETFKA
KAVDGSEFGVEKGQMIIAKQGPFGPYLEYGVKMYAPIKGFDPLSITLEESVALVENKIQA
DADKIVKTFPGTDVKILKGRWGPYITDVTTKKNAKIAKDEDALELSLEECEKRLEEAPEP
KKRGRAAAKKAPAKKAAAKKPAAKKTPAKKAAAKKPATKKPAAKKTTTRKVAAKKAAVKK
IDAK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgacgaatttggtgatagtggagtcccccgctaaagcaaaaacaatcgaaaaatatttg
ggtaaggattttactgtccgttcaagttatggtcacatccgcgatattcagaaaaagggt
atgggtatcgatcttgaaaacgggtttttacccaattacgaaatttcgtctgataaaaag
aaaaatgttacagagttaaaaaagctcgctaaagcctctgacactatctggctcgcaacg
gatgaggaccgcgaaggggaagccattgcttggcacctagcggaagccttaaacttagat
attaaaaccaccaaacgaattgtatttcatgaaattaccaaaccggctattcaggcagcg
attgctaatccgagaacggtagatttagatttggttgatgcacagcaagctagacgaata
ttagaccgtattgtaggttttgagttatctcctattttgtggaagaaaattcgtactggc
ctttcggctggacgtgttcagtctgtggcagtgcgtttaattgttgagcgtgaaaaagaa
gtagaagcctttgaatctaattttgtttttagagtacaaggtcagttaaagctgcttgat
aaaagcggtaacccagtaggcgatttagacgtaaaacgtacggctacttttgcaacagaa
gaagaggcaacggcatttttagaagccgtagcaaaagcaaatttatcggtggtttcatta
gaagagaaaccagcaaagcgaactccaaaagccccgtttaccacctcaaccttgcaacaa
gaagcctcttcaaaattaggcttttctgttaagcagacgatgatggtggcacagcgctta
tacgagtctggaaaaataacgtacatgcgtaccgattcggtgaatctctctgagttagcg
attgcccaggcaaaagagacaattacctctgaatacggtgcaaagtatagtgaatcaaga
cgctataaaactaaaaacgccgatgctcaagaggcacacgaagccattcgtccaactgac
tttggtgtagaaaatgtgacaggagagcgaaacgagcagcgtttatatcagctgatttgg
cgtagagccattgcttctcaaatggcagatgcacaattaaaaagaaccactgtagatgtt
gggattgatttgttaccagatgataaattaaccgccaagggtgaggtggttatctttgat
ggtttccttaaagtttatgactttgacgctaaagatggttcaggattgttgccaccaatg
acaatcggacaggcgttaagtgtcactgagcttggtgctaaacaaagttacagtcgtcct
ccagctcgttataacgaagcaagcttggtgagaaccttagaagagatggggattggtcgt
ccttcaacttatgctccgacgattgatacagttcaacaacgtggttatgtgattaaagaa
gatcgtgaaggtaagccaagagattaccgacaaatcactttagttgacggtaaagttagt
gctgaaacattgtcagaaatggcgggtacagagaaaaataaactgttccctactgatata
gccggcattgtaaccaactttttaacgaaacattttggtgatattttagattaccaattc
acggctaaggttgaaggcaagttcgatgtgattgcagaaggtaaaatgcaatggcaagac
atgttgagtgaattctatacacagtttcacccaagagttgtagcggccgaagatgtctct
cgagaagaggctggtcaagcacgttctttaggtaatcatcctgaatcaggtaagccaatg
tttgtgaaaattgggcgttatgggccttatgttcaagttggtgatggtgaaaatgaagaa
aagccgacttttgcaagcttgatgccaggtcaaaaaatggatttactcactttagagcaa
gcattagatttgtttaagctgccaagagaagtgggtgaaatgccagaaacctttaaggca
aaagccgttgatggttcagagtttggcgttgagaaggggcagatgattattgctaaacaa
ggaccgtttggaccttatttagaatatggtgtcaaaatgtacgcaccgattaaaggtttt
gaccccctaagcataacgttagaagaatcggttgctttggttgaaaataaaattcaggct
gatgccgataagattgttaaaacttttcctggtactgatgtcaaaatattgaaaggacgt
tgggggccttatattaccgacgttacgactaagaaaaacgcaaaaattgccaaagatgaa
gatgctttagaactctctttagaagagtgtgaaaagcgtttagaagaagcgccagaaccc
aaaaaacgtggacgcgcggcggccaaaaaagcacctgctaagaaagcggcagcgaaaaag
ccggcggctaaaaagacgcctgctaaaaaagcagcggctaagaaaccagccacaaaaaaa
ccagcagctaaaaaaacgactacccgaaaagtagccgccaaaaaggcagcagtaaagaaa
atagatgcgaaataa
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